CX297671

Overview
NameCX297671
Unique NameCX297671
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297671_ssr336 microsatellite CX297671_ssr336:336..351. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1178 contig Ccv1_Contig1178:203..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297671 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 2
Query:   47 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 169
            IQ ALAEWTGQRTVPNVFIGGKHIGGCD+   KH  G+LVP
Sbjct:   54 IQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVP 94          
BLAST of CX297671 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 2
Query:   47 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 169
            +Q ALAEWTGQRTVPNVFIGGKHIGGCD     HQ GKL+P
Sbjct:   54 LQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIP 94          
BLAST of CX297671 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 2
Query:   47 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 169
            IQAALAEWTGQRTVPNVFIG KHIGGCD     H+ GKL+P
Sbjct:   54 IQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLP 94          
BLAST of CX297671 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 2
Query:   47 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 169
            IQ+ LAEWTGQRTVPNVFIGG HIGGCD     H+ GKLVP
Sbjct:   54 IQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVP 94          
BLAST of CX297671 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 2
Query:   47 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 169
            +Q+ALAEWTGQRTVPNVFI GKHIGGCD  +  +  GKLVP
Sbjct:   54 LQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVP 94          
BLAST of CX297671 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 2
Query:   47 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 169
            +Q+ALA+WTGQRTVP VFI GKHIGGCD  +  H+GG LVP
Sbjct:   80 LQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVP 120          
BLAST of CX297671 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2
Query:   47 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 169
            IQ+AL+EWTGQ TVPNVFI G HIGGCD V+E ++ GKLVP
Sbjct:   70 IQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVP 110          
The following BLAST results are available for this feature:
BLAST of CX297671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GLRX_RICCO3.119e-1380.49Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GLRX_VERFO1.185e-1278.05Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GLRX_SOLLC4.503e-1278.05Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GRXC2_ARATH5.881e-1275.61Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GRXC6_ORYSJ3.812e-1173.17Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC4_ORYSJ6.503e-1170.73Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH6.503e-1173.17Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
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Properties
Property NameValue
Genbank descriptionC06004A05SK RindPdig24 Citrus clementina cDNA clone C06004A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297671 ID=CX297671; Name=CX297671; organism=Citrus clementina; type=EST; length=614bp
GAGGGTTTCACGTCGTAGAATTGGATATTGAAAGTGATGGAAGTAAATTC
AAGCAGCTCTGGCAGAGTGGACTGGGCAGAGAACCGTACCCAATGTGTTC
ATTGGGGGAAAACACATCGGTGGCTGCGACACTGTAGTAGAGAAGCACCA
AGGAGGAAAGCTGGTCCCCCTTCTTCGTGATGCCGGTGCCCTCGCCCTTG
CTGACAAATGATAATTTTGCTCCGTTAAGATCAGAACCACAAGTTCGTGT
ACATGGGCTGAAGTGAAGAAATGCAACAATATTAAAGTGACCAATTATAT
GGTGTGTAAAAGTAACAATCGATGTCCACTTTATTTGTGTGTGTGTGTGT
GTTTTATAGACATTTCTCTGCTTGATTGTAAAGTAAAATGAGAGATATGC
ATGCGGTGCTGCTCTCTGTATAAGGAGGGAAGCATTCGACCGGGAAGCGG
CTTCAGAGGTTTGTATTGTTGGTGAGACACCAACTAGCGCCTCTGGTTCA
TTCACATTTTATCGCAACCGGCAACGCTGGCTTTCAAGTTCAACTAGCAT
GCGGTAGAAAAGTTAAGTTGCATATTTATATATCAGGAAAAGAAAAGAGC
ATGATCAATTTCTT
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