CX297678

Overview
NameCX297678
Unique NameCX297678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_ARATH (E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.141e-79
Identity = 148/236 (62.71%), Postives = 180/236 (76.27%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713
            L+E +K K++EAEA IAEMETIGQA+EDMQTQNQHLLQQVAERDD NIKLVSESVKTK   +  LSEKQ + +QL Q+NA VE+ K RI H EEQMK C +EA +   EDRHL ++LETTKWE+ADA+KE +WLKSAV+SS+KEYEQI R+T+D                     +N ++ EL SE+ EAAI +LQ+E+K+CK ILKCGVCFDRP+EVVI KC+HLFC  CIQR+L
Sbjct:  641 LKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSEAYKLIQEDRHLVISLETTKWEVADADKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDERREKKKLEEELMELNKELEELGSESVEAAIVRLQEEVKNCKNILKCGVCFDRPKEVVIVKCYHLFCQQCIQRSL 876          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.654e-76
Identity = 141/236 (59.75%), Postives = 180/236 (76.27%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713
            L+E+++ K+ E + +I+E+ETIGQA+EDMQTQNQHLLQQVA+RDD NIKLVS+SVK KQ    LL+EK  L +QLQ +N+ +ES+KL+I   EEQMK  + +A++ +SE+RHLA++LE T  E++DAEKELKWL+SA  S++KEYE  Q+K  +                     V N+V+ELTSET E  IQKLQDEIK+CKAILKCGVCFDRP+EVVITKCFHLFC+PCIQRNL
Sbjct:  585 LKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERERNERIKLEEEYEEVKNEVSELTSETEETTIQKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNL 820          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSI (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 7.654e-76
Identity = 141/236 (59.75%), Postives = 180/236 (76.27%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713
            L+E+++ K+ E + +I+E+ETIGQA+EDMQTQNQHLLQQVA+RDD NIKLVS+SVK KQ    LL+EK  L +QLQ +N+ +ES+KL+I   EEQMK  + +A++ +SE+RHLA++LE T  E++DAEKELKWL+SA  S++KEYE  Q+K  +                     V N+V+ELTSET E  IQKLQDEIK+CKAILKCGVCFDRP+EVVITKCFHLFC+PCIQRNL
Sbjct:  585 LKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERERNERIKLEEEYEEVKNEVSELTSETEETTIQKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNL 820          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 86/237 (36.29%), Postives = 131/237 (55.27%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAI-QKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713
            L   +KSK  E EAY  E+E IGQA+ED+Q QNQ LLQQ+ ERDD N K+  E VK KQ Q  L  E  +L R LQQ ++L++    +I+  E+Q+K       +   +    +V+L   + +L D  ++ + L  ++          + +  D                     ++ K + L ++  E+A+ +KL+ E+K+ + ILKCG+C DR +EVVITKC+HLFCN CIQ++L
Sbjct:  624 LSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQESSLMDLYNQKIVSLEDQLKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSLDGIQANVGSSRLEVADLLIELEKERFSKKRIEDDLEVMSRKASSLRAKARESAVLEKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLFCNQCIQKSL 860          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_ORYSI (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 86/237 (36.29%), Postives = 131/237 (55.27%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAI-QKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713
            L   +KSK  E EAY  E+E IGQA+ED+Q QNQ LLQQ+ ERDD N K+  E VK KQ Q  L  E  +L R LQQ ++L++    +I+  E+Q+K       +   +    +V+L   + +L D  ++ + L  ++          + +  D                     ++ K + L ++  E+A+ +KL+ E+K+ + ILKCG+C DR +EVVITKC+HLFCN CIQ++L
Sbjct:  624 LSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQESSLMDLYNQKIVSLEDQLKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSLDGIQANVGSSRLEVADLLIELEKERFSKKRIEDDLEVMSRKASSLRAKARESAVLEKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLFCNQCIQKSL 860          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_ARATH (E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.253e-35
Identity = 84/233 (36.05%), Postives = 126/233 (54.08%), Query Frame = 3
Query:   12 EAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTS-ETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQR 707
            + +KSK  E   Y++E++TIG A+ED+  QNQ LL QV ERDD NIKL  E + ++Q+Q  LL +K  + + +QQ +A       +    E+Q++ C  +  +   +    +V+LE  + + AD    L+  +S +  S  + EQ +                             KV+ L S   G +AIQKL+ E+ + K ILKC  C DRP+EVVITKC+HLFCNPC+Q+
Sbjct:  620 DILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQVTERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTDQFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKVEQSRLDYGALELELEIERFNRRRIEEEMEIAKKKVSRLRSLIEGSSAIQKLRQELSEFKEILKCKACNDRPKEVVITKCYHLFCNPCVQK 852          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_RAT (E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L+  + +  +E EA ++EM+  GQAFEDMQ QN  LLQQ+ E+DD N KL+SE +K  Q+   L  EK  L  Q+  + + V++  L +   EE+ +A               ++AL  N      A  L E  K +L   +  L+ ++  +  S    +KE   ++R  ED                        +  E+ ++  E     LQ+EIK+ KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  741 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 974          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_PONAB (E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L+  + +  +E EA ++EM+  GQAFEDMQ QN  LLQQ+ E+DD N KL+SE +K  Q+   L  EK  L  Q+  + + V++  L +   EE+ +A               ++AL  N      A  L E  K +L   +  L+ ++  +  S    +KE   ++R  ED                        +  E+ ++  E     LQ+EIK+ KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  740 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 973          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_MOUSE (E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L+  + +  +E EA ++EM+  GQAFEDMQ QN  LLQQ+ E+DD N KL+SE +K  Q+   L  EK  L  Q+  + + V++  L +   EE+ +A               ++AL  N      A  L E  K +L   +  L+ ++  +  S    +KE   ++R  ED                        +  E+ ++  E     LQ+EIK+ KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  740 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 973          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_MACFA (E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L+  + +  +E EA ++EM+  GQAFEDMQ QN  LLQQ+ E+DD N KL+SE +K  Q+   L  EK  L  Q+  + + V++  L +   EE+ +A               ++AL  N      A  L E  K +L   +  L+ ++  +  S    +KE   ++R  ED                        +  E+ ++  E     LQ+EIK+ KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  740 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 973          
The following BLAST results are available for this feature:
BLAST of CX297678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BRE1B_ARATH1.141e-7962.71E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabido... [more]
BRE1B_ORYSJ7.654e-7659.75E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
BRE1B_ORYSI7.654e-7659.75E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
BRE1A_ORYSJ1.081e-3736.29E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza s... [more]
BRE1A_ORYSI1.081e-3736.29E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza s... [more]
BRE1A_ARATH2.253e-3536.05E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabido... [more]
BRE1B_RAT2.337e-2430.68E3 ubiquitin-protein ligase BRE1B OS=Rattus norveg... [more]
BRE1B_PONAB2.337e-2430.68E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii ... [more]
BRE1B_MOUSE2.337e-2430.68E3 ubiquitin-protein ligase BRE1B OS=Mus musculus ... [more]
BRE1B_MACFA2.337e-2430.68E3 ubiquitin-protein ligase BRE1B OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionC06004A12SK RindPdig24 Citrus clementina cDNA clone C06004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297678 ID=CX297678; Name=CX297678; organism=Citrus clementina; type=EST; length=713bp
GAGGGCTCGAAGAGGCTATGAAAAGCAAAGATCGAGAAGCGGAAGCATAC
ATTGCTGAAATGGAGACCATTGGTCAAGCATTCGAAGATATGCAGACACA
GAACCAGCATTTGCTCCAGCAAGTGGCTGAGAGGGATGACCTAAATATTA
AGCTTGTCTCTGAGAGTGTGAAGACTAAGCAAGTGCAAAGCTTTCTACTC
TCTGAGAAGCAGGCACTGGCAAGGCAACTTCAACAAATCAATGCATTGGT
GGAATCTGCAAAATTGAGAATTCTCCATGCTGAAGAACAGATGAAAGCCT
GTCTGACAGAGGCTCTTAGATATAACTCTGAAGACAGACATCTTGCAGTC
AACCTTGAAACTACAAAGTGGGAATTAGCAGATGCAGAGAAAGAGTTGAA
GTGGCTGAAGTCTGCCGTTACTTCTTCTGATAAGGAATATGAGCAGATCC
AGCGGAAGACGGAAGACATGCGAAAAGAATTGGAAAATGAAAGAAATGAA
AGAAAGAAGCTAGAGGAAGAGCTCATGGAAGTAAATAATAAGGTTGCCGA
ATTGACTTCTGAAACTGGTGAGGCTGCAATACAGAAACTTCAGGACGAGA
TAAAAGATTGCAAAGCAATTCTCAAGTGTGGCGTGTGTTTTGACCGCCCC
CAAGAGGTTGTTATAACAAAATGCTTTCATCTGTTCTGCAATCCGTGTAT
CCAAAGAAATCTT
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