CX297680

Overview
NameCX297680
Unique NameCX297680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig321 contig Ccv1_Contig321:11..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.886e-46
Identity = 92/213 (43.19%), Postives = 139/213 (65.26%), Query Frame = 3
Query:   99 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALV--LXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVY 731
            ++V LLG   SPFV RV++AL+ KGV +Y+++EE++ NKS  LL+ NPV+KKVPVF+H E+ + ESL+I+EYIDETW+ NP+LP DPYQRA+ARFW+K+ ++ +  A    V  +               L+ +E E K K    F  GE   G +++A  +I +W+P+++E    Q+   +KFP++ +WS +F+NHP + E LP RD +  Y
Sbjct:    6 EDVKLLGIVGSPFVCRVQIALKLKGV-EYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKK---FFGGE-EFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAY 213          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.430e-40
Identity = 90/210 (42.86%), Postives = 128/210 (60.95%), Query Frame = 3
Query:  102 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVY 731
            EV LLGFW SPF  RV+ AL+ KGV  YEYIEED  NKS  LL+ NP++KKVPV IH  K + ES++ILEYIDET+E   +LP+DPY RA+ARFWAK+ ++ +       +                L+ ++ E K K    F  G+   G+ ++A   + +WL V+EEA    ++  +KFP   +W  +++N   IKE+LP RD++L +
Sbjct:    3 EVKLLGFWYSPFSRRVEWALKIKGV-KYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVPAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKK---FFVGD-KFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAF 207          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.440e-40
Identity = 91/210 (43.33%), Postives = 127/210 (60.48%), Query Frame = 3
Query:  102 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVY 731
            EV LLGFW SPF  RV+ AL+ KGV  YEYIEED  NKS  LL+ NPVYKKVPV IH  K + ES+IILEYIDET+E   +LP+DPY RA+ARFWAK+ ++ +A                       L+ ++ E K K    F  G+   G+ ++A   + +WL V+EE     ++  +KFP  ++W  +++N   + E+LP RD++L +
Sbjct:    3 EVKLLGFWYSPFSHRVEWALKIKGV-KYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKK---FFAGD-KFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAF 207          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.435e-40
Identity = 89/210 (42.38%), Postives = 127/210 (60.48%), Query Frame = 3
Query:  102 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVY 731
            EV LLGFW SPF  RV+ AL+ KGV  YEYIEED  NKS  LL+ NPV+KKVPV IH  K + ES++ILEYIDET+E   +LP+DPY RA+ARFW+K+  + +A                       L+ ++ E K K    F  G+   G+ ++A   + +WL V+EE     ++  +KFP  + W  +++N   +KE+LP+RD++L +
Sbjct:    3 EVKLLGFWYSPFTHRVEWALKLKGV-KYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETFEGPSILPKDPYDRALARFWSKFLGDKVAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKK---FFVGD-KFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELLAF 207          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.173e-34
Identity = 85/211 (40.28%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   99 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPYQRAMARFWAK-YSEELMAKAFMALVLXXXXXXXXXXXXXXGL-EKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWL--PVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQ 719
            +EV LLG WASPF  RV++AL+ KG+  YEY+EE + NKSP LL LNP++KKVPV +H  K + ES +ILEYIDETW QNP+LP+DPY+R+ ARF+AK   E++M   F+++                 L   +E E  GK       G   +G+L+   G ++ +     WE  G  +V+  +KFP    W        ++K+ +P R++
Sbjct:    5 EEVKLLGIWASPFSRRVEMALKLKGI-PYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQNPILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKGREVLAEQVRELIMYLEKELVGKDYF----GGKTVGFLDFVAGSLIPFCLERGWEGIG-LEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREE 209          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 80/209 (38.28%), Postives = 116/209 (55.50%), Query Frame = 3
Query:  102 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLV 728
            EV LLG   SPF  RV+ AL+ KGV  YE+IEED+ NKSP LL+ NP++KK+PV IH  K + ES++ILEYIDE +E   +LP+DPY RA+ARFWAKY E+  A  + +                  L+ ++ EFK K   +        G+ ++       +L + EE     +   +KFP    W  ++      +E  P+RD++L+
Sbjct:    3 EVKLLGLRYSPFSHRVEWALKIKGV-KYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPSILPKDPYDRALARFWAKYVEDKGAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFV----GDKFGFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEYCTQN--EEYFPSRDELLI 204          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 71/203 (34.98%), Postives = 112/203 (55.17%), Query Frame = 3
Query:  102 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWE-----QNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVL---XXXXXXXXXXXXXXGLEKIEGEF----KGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKF 674
            E+ LLG W+SP+  RV+V L  K +  YEY+EE++ +KS  LL  NPV+K VPV +H  + VNES +I++YIDE W      +  ++P DPY+RA+ARFWA Y ++ +  A++A++                   LE +EG F    KGK       G   +G++++  G  L W    ++    +++DP + P +  W  +F
Sbjct:    6 ELKLLGVWSSPYAIRVRVVLNLKSL-PYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFF----GGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERF 203          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 70/209 (33.49%), Postives = 115/209 (55.02%), Query Frame = 3
Query:   93 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETW-EQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAE---GESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLP 707
            M+ EV LL  WAS +  R ++AL +KGV  YEY EE++ N+SP LL++NP++KK+PV IH  K + ES II++YIDE W +++PL+P DPY+R+ ARFW  Y ++ +   +  + L              G +++   FK     L  +   G+   G+++L       W   +E  G+F++   ++ P +  W  + +    +   LP
Sbjct:    1 MSDEVVLLDTWASMYGMRARIALAEKGV-RYEYKEENLMNRSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKSPLMPSDPYKRSQARFWVDYIDKKIYDTWKKMWL------SKGEEHEEGKKELISIFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKM--EEECPKLMAWVKRCMERETVSNTLP 200          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 72/206 (34.95%), Postives = 111/206 (53.88%), Query Frame = 3
Query:   96 AKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETW-EQNPLLPRDPYQRAMARFWAKY-SEELMAKAFMALVLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLP 707
            +  V LL FW S F  R+++AL  KG+  YE  EE++ +KSP LLE+NPV+KK+P+ IH  K + ESL ILEYIDE W ++ PLLP DPY+R+ ARFWA Y  +++ +                       L+ +EGE   K+      G  N+G++++A      W   +E   +F +    + P +  W+   +    + ++LP
Sbjct:    3 SNNVVLLDFWPSSFGMRLRIALALKGI-KYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYF----GGDNLGFVDVALVPFTSWFYSYETCANFSI--EAECPKLVVWAKTCMESESVSKSLP 201          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 74/214 (34.58%), Postives = 114/214 (53.27%), Query Frame = 3
Query:   99 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNP--LLPRDPYQRAMARFWAKYSEELMAKAFMAL-VLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVY 731
            +EV LL FW S F  R+++AL +K +  YEY EED+ NKSP LL++NP++KK+PV IH  K + ES+I +EYI+E W+     LLP DPY RA ARFWA Y ++ +      L                  L+ +EG    K    +  GES  G++++A      W   +E  G+F      + P    W+ + +    + ++LP + ++L +
Sbjct:    4 EEVILLDFWPSMFGMRLRIALAEKEI-KYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKP---YFGGES-FGFVDIALIGYYSWFYAYETFGNFST--EAECPKFVAWAKRCMQRESVAKSLPDQPKVLEF 210          
The following BLAST results are available for this feature:
BLAST of CX297680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GSTX6_SOYBN3.886e-4643.19Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX1_TOBAC1.430e-4042.86Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX2_TOBAC2.440e-4043.33Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_TOBAC5.435e-4042.38Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_ARATH1.173e-3440.28Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX1_SOLTU4.927e-3338.28Probable glutathione S-transferase OS=Solanum tube... [more]
GSTU6_ORYSJ1.937e-2934.98Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX3_SOYBN4.772e-2833.49Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXA_TOBAC1.813e-2734.95Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX4_TOBAC6.891e-2734.58Probable glutathione S-transferase OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionC06004B02SK RindPdig24 Citrus clementina cDNA clone C06004B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297680 ID=CX297680; Name=CX297680; organism=Citrus clementina; type=EST; length=732bp
CACAGAATATCATCTCATCATCACCACCACAAGAAATAAATCATCTCATC
ACAAAGCATTACAGAGATCAATTAACTATCAGCGAAAATAATATGGCCAA
AGAAGTGACGCTTTTGGGGTTTTGGGCAAGTCCATTTGTGTTCAGGGTAA
AAGTCGCTCTGCAGCAGAAGGGTGTTGTTGATTATGAATACATTGAAGAA
GACATCTTTAACAAGAGCCCCAGGCTCTTGGAACTGAACCCAGTTTATAA
GAAGGTTCCTGTGTTCATCCATGGCGAGAAAGTGGTCAATGAATCGTTGA
TTATTCTTGAGTACATCGATGAGACATGGGAGCAAAATCCTTTGTTGCCT
CGAGACCCTTACCAAAGAGCCATGGCTCGTTTCTGGGCTAAATATTCAGA
AGAACTGATGGCGAAAGCATTTATGGCTCTGGTTTTGAAAGGAGAGGCAA
AGGAGAAAAATGCGAAAGAATTTGCAGAAGGATTGGAGAAGATAGAAGGG
GAATTCAAGGGAAAGAGCGGCTTATTGTTTGCTGAAGGAGAGAGCAATAT
TGGGTATTTGGAACTTGCATTTGGTTGGATTCTTTACTGGCTGCCTGTTT
GGGAAGAAGCTGGATCCTTTCAAGTTCTTGACCCTCAGAAATTTCCAGTC
ATCACTGAATGGAGCACCAAGTTTGTGAATCACCCTCTCATCAAAGAAAA
CTTGCCGGCCAGGGACCAGATGCTCGTCTATT
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