CX297681

Overview
NameCX297681
Unique NameCX297681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNJ20_ARATH (Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.008e-36
Identity = 85/184 (46.20%), Postives = 118/184 (64.13%), Query Frame = 2
Query:   89 PIASSMLAEASSCLSFNPHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNHLATGSFIAFSSRKPSRY-KEGLDDYGTWRIRWQSQLTELKRRSMNKDSRDHMSWGSRIRRRHRSKT 637
            PI+S       + +S+ P   + S S + QS      P+K S         SFYDLLG+ +SVT  EIKQAYK L  KYHPDVSPP+R++E T RFIR+QEAYETLSDP  R LYD  L+ G   +FS R+ +RY +E +++   W+ +WQ+QL+ L+RRS  KD+ + MSW +R+RR+ +  +
Sbjct:   23 PISSLQPTSIPTTISY-PTRTRFS-STRIQSRLTHDDPVKQSEDL------SFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDRDLSMGFSFSFSGRRQNRYDQEVVEEKSEWKAKWQTQLSGLRRRSNQKDN-NTMSWAARMRRQQQESS 197          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_THESQ (Chaperone protein dnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  239 ESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            + +Y++LG+P+  T  EIK+AYK LV ++HPD  P  R  E  +RF  +QEAYE LSDP  RA+YD
Sbjct:    6 KDYYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQRFKEIQEAYEVLSDPQKRAMYD 70          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_THEP1 (Chaperone protein dnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  239 ESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            + +Y++LG+P+  T  EIK+AYK LV ++HPD  P  R  E  +RF  +QEAYE LSDP  RA+YD
Sbjct:    6 KDYYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQRFKEIQEAYEVLSDPQKRAMYD 70          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_THEMA (Chaperone protein dnaJ OS=Thermotoga maritima GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  239 ESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            + +Y++LG+P+  T  EIK+AYK LV ++HPD  P  R  E  +RF  +QEAYE LSDP  RA+YD
Sbjct:    6 KDYYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQRFKEIQEAYEVLSDPQKRAMYD 70          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_THENN (Chaperone protein dnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  239 ESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            + +Y++LG+P++ T  EI++AYK LV ++HPD  P  R  E  +RF  +QEAYE LSDP  RA+YD
Sbjct:    6 KDYYEILGVPRNATQEEIRKAYKRLVKEWHPDRHPENR-KEAEQRFKEIQEAYEVLSDPQKRAMYD 70          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLCV (Chaperone protein dnaJ OS=Chlamydophila caviae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  245 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNHLATGSF 460
            +YD+LG+ ++ +P EIK++Y+ L +KYHPD +P +   E  KRF  + EAYE LSDP  R  YD +   G F
Sbjct:    3 YYDVLGVSKTASPEEIKKSYRKLAVKYHPDKNPGDA--EAEKRFKEVSEAYEVLSDPQKRESYDRYGKNGPF 72          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLAB (Chaperone protein dnaJ OS=Chlamydophila abortus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  245 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNHLATGSF 460
            +YD+LG+ ++ +P EIK++Y+ L +KYHPD +P +   E  KRF  + EAYE LSDP  R  YD +   G F
Sbjct:    3 YYDVLGVSKTASPEEIKKSYRKLAVKYHPDKNPGDA--EAEKRFKEVSEAYEVLSDPQKRESYDRYGKDGPF 72          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_ANATD (Chaperone protein dnaJ OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  230 AATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            A  + +Y++LG+P++ T  EIK+AY+ L  +YHPD +P  +  E  ++F  + EAYE LSDP  R LYD
Sbjct:    2 AQKKDYYEILGVPRNATEEEIKRAYRRLAKQYHPDANPGNK--EAEEKFKEINEAYEVLSDPEKRKLYD 68          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRCR (Chaperone protein dnaJ OS=Ehrlichia chaffeensis (strain Arkansas) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  245 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNH 442
            +YDLLG+ +S TP EIK+AY+ + LKYHPD +P  +  E  ++F  L EAY+ L D + RA YD +
Sbjct:    6 YYDLLGVSKSATPEEIKKAYRKMALKYHPDKNPGNK--EAEEKFKELSEAYDVLIDQDKRAAYDKY 69          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  239 ESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNHLATGSFIAFSSRKPSRYKEGLD 508
            + +Y++LG+P++ T  EIKQAY+ LV +YHPD++      E   +F  + EAYE LSDP  RA YD     G F  +   +      G D
Sbjct:    5 KDYYEILGVPRNATQDEIKQAYRRLVRQYHPDLNKDPSAHE---KFKEINEAYEVLSDPQKRAQYDQFGHVGDFSGYGDFQGGWQPGGFD 91          
The following BLAST results are available for this feature:
BLAST of CX297681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DNJ20_ARATH3.008e-3646.20Chaperone protein dnaJ 20, chloroplastic OS=Arabid... [more]
DNAJ_THESQ1.776e-1251.52Chaperone protein dnaJ OS=Thermotoga sp. (strain R... [more]
DNAJ_THEP11.776e-1251.52Chaperone protein dnaJ OS=Thermotoga petrophila (s... [more]
DNAJ_THEMA1.776e-1251.52Chaperone protein dnaJ OS=Thermotoga maritima GN=d... [more]
DNAJ_THENN3.029e-1250.00Chaperone protein dnaJ OS=Thermotoga neapolitana (... [more]
DNAJ_CHLCV6.747e-1245.83Chaperone protein dnaJ OS=Chlamydophila caviae GN=... [more]
DNAJ_CHLAB8.812e-1245.83Chaperone protein dnaJ OS=Chlamydophila abortus GN... [more]
DNAJ_ANATD1.963e-1144.93Chaperone protein dnaJ OS=Anaerocellum thermophilu... [more]
DNAJ_EHRCR2.564e-1148.48Chaperone protein dnaJ OS=Ehrlichia chaffeensis (s... [more]
DNAJ_DICT62.564e-1138.89Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]

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Properties
Property NameValue
Genbank descriptionC06004B03SK RindPdig24 Citrus clementina cDNA clone C06004B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297681 ID=CX297681; Name=CX297681; organism=Citrus clementina; type=EST; length=760bp
AGCGCATCACTCAGAAGCAAAAATGAGTCACGGAATAGTCTCACCTGCAG
CCCAATCAAATTTCCTAAACCACTCCAAATCCAGCATCCCAATCGCGAGC
TCCATGCTTGCCGAAGCTTCTTCTTGTCTCAGCTTCAATCCCCATCTCCC
AAAACTAAGCTTTTCTCTGAAAACTCAATCTGGGTCCTTGAGAAGAGGAC
CAATCAAGGCCTCTGCTCAGAGCTTGTCTGCCGCAACAGAGAGTTTCTAT
GACTTGTTGGGCATTCCTCAAAGCGTGACGCCGAGAGAAATCAAGCAAGC
TTACAAGCACCTTGTGCTGAAATATCATCCTGACGTGTCACCTCCAGAAC
GCATAGACGAGAACACTAAGAGGTTCATTCGGTTACAAGAAGCTTACGAG
ACCTTGTCTGATCCCAATACAAGAGCTTTATATGACAATCATTTGGCCAC
CGGTTCATTTATAGCTTTTTCATCTAGGAAACCGTCCCGTTACAAGGAGG
GTCTGGATGATTACGGGACTTGGAGGATCCGATGGCAGTCTCAACTGACA
GAGCTGAAGAGAAGGAGCATGAATAAGGATTCAAGGGACCATATGTCGTG
GGGATCTAGAATCCGCCGGCGCCATAGAAGCAAAACAACAGCTGATGATA
TTGACAGAAACTCGACTATAAAAGTTTGATGTTACAATTAGCTCATCTCG
TATTACAGTATAGCTAGCTAGAAGAATATGCTCATTATGTGTACATTATT
AATTTGAATG
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