CX297687

Overview
NameCX297687
Unique NameCX297687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig467 contig Ccv1_Contig467:127..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 8.470e-66
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 367
            NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET
Sbjct:   47 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 166          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.944e-55
Identity = 99/120 (82.50%), Postives = 112/120 (93.33%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 367
            NY EL++LY++YK++GLEILAFPCNQFG QEPGDNEQI EFACTRFKAEFPIFDKVDVNG NAAP+YK+LKSSKGGLFGD IKWNF+KFLVD++G VV+RYAPTTSP SIEKDIKKL+ T
Sbjct:   50 NYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLIGT 169          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.499e-54
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NYTEL+QLY+KYK  G EILAFPCNQFG QEPG NE+I +FACTRFKAE+PIFDKVDVNGD AAP+YK LKSSKGGLFGD IKWNF+KFLVDK+GNVV+R+APTTSPLSIEKD+KKLL
Sbjct:  111 NYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLL 228          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.438e-54
Identity = 95/118 (80.51%), Postives = 109/118 (92.37%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NYTE+++LY+KY+  GLEILAFPCNQFG QEPG NE++ EFACTRFKAE+PIFDKVDVNG NAAP+YK LKSSKGGLFGD +KWNF+KFLVDK+GNVV+RYAPTTSP SIEKD+KKLL
Sbjct:   50 NYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLL 167          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.438e-54
Identity = 97/118 (82.20%), Postives = 108/118 (91.53%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NYT+L+++Y KYK+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+EKDIKKLL
Sbjct:   49 NYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.269e-53
Identity = 96/118 (81.36%), Postives = 108/118 (91.53%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NYT+++++Y KYK+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+EKDIKKLL
Sbjct:   49 NYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.223e-53
Identity = 94/118 (79.66%), Postives = 108/118 (91.53%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NYT++++LY KYK+QGLEILAFPCNQFG QEPG+ E IQ+  CTRFKAE+PIFDKVDVNGDNAAPLY+ LKSSKGG FGD IKWNFSKFL+DKEG+VV+RY+PTTSP S+EKDIKKLL
Sbjct:   49 NYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLL 166          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.403e-52
Identity = 97/119 (81.51%), Postives = 107/119 (89.92%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD-NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NYT+L+++Y KYK+QGLEILAFPCNQFG QEPG   E IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+EKDIKKLL
Sbjct:   49 NYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 167          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.893e-51
Identity = 94/118 (79.66%), Postives = 103/118 (87.29%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NY EL+ LY KYK+QG EILAFPCNQFG QEPG NE+IQ FACTRFKAE+P+F KV+VNG  A PLYK LKSSKGG  GDSIKWNF+KFLVD+EG VV+RYAPTTSPLSIEKDIKKLL
Sbjct:   60 NYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTTSPLSIEKDIKKLL 177          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.896e-49
Identity = 89/118 (75.42%), Postives = 101/118 (85.59%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NYTELS LY+ +KN+GLE+LAFPCNQFG QEPG NE+I++FACT+FKAEFPIFDKVDVNG   AP+Y+ LKSS GG FGD +KWNF KFLVDK G VVERY PTTSP  IEKDI+KLL
Sbjct:  117 NYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234          
The following BLAST results are available for this feature:
BLAST of CX297687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX4_CITSI8.470e-66100.00Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR3.944e-5582.50Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_ARATH1.499e-5483.05Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL7.438e-5480.51Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY7.438e-5482.20Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC1.269e-5381.36Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC8.223e-5379.66Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI1.403e-5281.51Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_HELAN5.893e-5179.66Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_PEA1.896e-4975.42Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionC06004B09SK RindPdig24 Citrus clementina cDNA clone C06004B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297687 ID=CX297687; Name=CX297687; organism=Citrus clementina; type=EST; length=587bp
GAGGTTCAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATC
AAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAG
CCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGC
TGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTC
CTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGC
ATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGT
TGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAA
AGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCT
TCTTGCTAATAAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAA
TATATGTTTAGCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCT
AATGTCGAAGTAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAAT
GTTCCCAGTTTTTGTAATTCAAAATAAAAGGTGCTTG
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