CX297690

Overview
NameCX297690
Unique NameCX297690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297690 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.665e-24
Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 QGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGFNC 237
            +GVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGTQMRRKMWFQNM                   S+CGGFNC
Sbjct:  142 KGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNC 219          
BLAST of CX297690 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.910e-22
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 QGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGFNC 237
            +GVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGT++RRKMWF+NM                   SVCGGF C
Sbjct:  207 KGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of CX297690 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21
Identity = 51/78 (65.38%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 QGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGFNC 237
            +GVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR  GTQMRRKMW QNM                   SVC GF C
Sbjct:  142 KGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of CX297690 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.758e-21
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    4 QGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGFNC 237
            +GVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGT+M+RK+WF+NM                   SVC GF C
Sbjct:  142 KGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of CX297690 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.416e-17
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    4 QGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGFNC 237
            +G+MMDNIEKVLDRGEKIELLVD+TENL+ QA  F++QG Q+RRKMW Q++                     CGGF C
Sbjct:  161 KGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of CX297690 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.029e-17
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 QGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGFNC 237
            + +M++NI+K +DRGE + +L D+TENLRSQAQ++++QGTQ+RRK+W+QNM                   SVC GFNC
Sbjct:  143 KSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
The following BLAST results are available for this feature:
BLAST of CX297690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VA722_ARATH2.665e-2469.23Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA725_ARATH1.910e-2265.38Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH2.112e-2165.38Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA726_ARATH2.758e-2162.82Putative vesicle-associated membrane protein 726 O... [more]
VA727_ARATH1.416e-1753.85Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA724_ARATH7.029e-1747.44Vesicle-associated membrane protein 724 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC06004B12SK RindPdig24 Citrus clementina cDNA clone C06004B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297690 ID=CX297690; Name=CX297690; organism=Citrus clementina; type=EST; length=409bp
AGGCAAGGTGTTATGATGGATAACATAGAGAAGGTTCTTGATCGTGGAGA
GAAAATTGAGCTTCTGGTGGATAGAACAGAGAATCTTCGCTCACAGGCGC
AGGATTTCAGACAGCAGGGAACCCAGATGAGGAGAAAGATGTGGTTTCAG
AACATGAAGATCAAACTGATTGTTCTGGGAATCATAATTGCCTTGATTCT
CATTATTGTATTATCTGTATGCGGTGGCTTCAATTGTTGATGATACTTCG
TACTCTATTAGTATTGTTGCTGCTTGTCAACTGTTTCTTGATGTGTTTAC
TCGTAATTTTGTCCGTTCTCACAAGACCAATGCTTGTATAGTCTGTATTT
TTTGAATTGTTCTGATAACAAATTTCTTGATGTGTGGAAAAAAAAAAAAA
AAAAAAAAA
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