CX297691

Overview
NameCX297691
Unique NameCX297691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.474e-53
Identity = 100/182 (54.95%), Postives = 118/182 (64.84%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YA SQV +E++Y   QT VY LILYSM+G+ W   +FFWF Y ++  F+ FTLYGMM+VALTP  QI  I   FFLS WNLFSGFLIPR QIPIWWRWYYW SPVAWTLYG++TSQVGD +  V I G    M++K LLK+ FGF YD                       I  +NFQRR
Sbjct: 1273 IPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITG-VGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.726e-51
Identity = 98/182 (53.85%), Postives = 118/182 (64.84%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YA SQV +E++Y   QT VY LILYSM+G  W   +F WF Y ++ SF+ FTLYGMM++ALTP  QI  I   FFLSLWNLFSGFLIPR QIPIWWRWYYW +PVAWTLYGL+TSQVGD +  V I G    + +K LLK+ FGF++D                       I  +NFQRR
Sbjct: 1274 IPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISG-IGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.036e-50
Identity = 92/182 (50.55%), Postives = 117/182 (64.29%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L YAF+QV IE IYVA QT VY L+L+SM+G+ W A +FF+F Y + M F  F++YGMM+VALTP  QI AI+  FFLS WNLFSGFLIPR  IP+WWRWYYW SPVAWT+YG+  SQVGD    +E+ G T  + V + LK+  G+ +D                       I  +N+Q+R
Sbjct: 1280 LPYAFAQVAIETIYVAIQTFVYSLLLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 86/182 (47.25%), Postives = 116/182 (63.74%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YAF+QVLIE+ Y+  Q  VY LI+YSM+GF W   +FFW  + +  +F+ FT +GMM VA+TP   + +I++GFF ++WNLFSGF++PR +IPIWWRWYYW  P+AWTLYGLV SQ GD++     P +    TV+Q L+ +FGFK+D                     L I   NFQRR
Sbjct: 1259 IPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQD----PLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 84/182 (46.15%), Postives = 115/182 (63.19%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YA SQV  EL YV  QTV Y LI+Y+M+GF WKA++FFWF+++   SF+ +T YGMM V+LTP  Q+ +I +  F  ++NLFSGF IPR +IP WW WYYW+ PVAWT+YGL+ SQ GD+E  +++ G    +TVKQ ++D +GF+ D                       I  +NFQ R
Sbjct: 1288 MPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.640e-46
Identity = 85/182 (46.70%), Postives = 112/182 (61.54%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YA SQV  EL YV  QT  Y LI+YSM+GF WKA +F WF+++   SF+ +T YGMM V+LTP  Q+ +I +  F  ++NLFSGF IPR +IP WW WYYW+ PVAWT+YGL+TSQ GD+E  + + G    +TVKQ +KD +GF+ D                       I  +NFQ R
Sbjct: 1261 IPYAISQVTCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.310e-45
Identity = 82/182 (45.05%), Postives = 112/182 (61.54%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L YA +QV+ E+ YV  QT  Y LI+Y+MM F W   +FFWF ++  MSF+ FT YGMM VALTP  Q+ A+ +G F  L+NLFSGF+IPR +IP WW WYYW+ PVAWT+YGL+ SQ GD+E  +++PG     T+K  +++ +G+  D                       I  +NFQ+R
Sbjct: 1235 LPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416          

HSP 2 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   58 FQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSG-FFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQV 366
            F++VV+V I Y M+GFA +  RF   L ++ ++  Q        +A T    I A   G   + L  L  GF++PR +IP WW+W YW+SP+A+T   L  +++
Sbjct:  609 FESVVWVTITYYMIGFAPELSRFLKHLLVIFLT-QQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEM 711          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.919e-45
Identity = 83/182 (45.60%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YAF+QV IE+ YV  Q +VY LI+Y+M+GF W A +FFW+L+ +  SF+ FT YGMM VA+TP   I +++S  F  +WNLFSGFLIPR  +P+WW WYYWL PVAWTLYGL+ SQ GDI      P + + M+VKQ +++ +G++                       + I   NFQ+R
Sbjct: 1246 MPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITE----PMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.813e-45
Identity = 86/182 (47.25%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L YAF+QVLIE+ ++  QTVVY LI+YS++GF W  ++FFW+++ +  +FM FT YGMM VA+TP   I AI+S  F  +WN+F+GFLIPR +IPIWWRWY W  PVAWTLYGLV SQ GDI  +    G      V+  ++  FGF++D                      +I + NFQRR
Sbjct: 1267 LPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLEDGE----VVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.813e-45
Identity = 83/182 (45.60%), Postives = 115/182 (63.19%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YAF QV IE+ Y+  Q+V Y +I+Y+M+GF W   +FFW+L+++  + + FT YGMM VA+TP   + +I++ FF  +WNLFSGF+IPR ++P+WWRWYYW +PVAWTLYGLV SQ GDI+  +     +   TV+Q L+  FGFK+D                      AI   NFQRR
Sbjct: 1258 IPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKL-----SDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
The following BLAST results are available for this feature:
BLAST of CX297691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
AB34G_ARATH8.474e-5354.95ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH2.726e-5153.85ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR2_NICPL1.036e-5050.55Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_NICPL1.829e-4747.25Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB36G_ARATH1.185e-4646.15ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB35G_ARATH2.640e-4646.70ABC transporter G family member 35 OS=Arabidopsis ... [more]
AB29G_ARATH1.310e-4545.05ABC transporter G family member 29 OS=Arabidopsis ... [more]
AB40G_ARATH2.919e-4545.60ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR7_ORYSJ3.813e-4547.25Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR1_TOBAC3.813e-4545.60Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionC06004C01SK RindPdig24 Citrus clementina cDNA clone C06004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297691 ID=CX297691; Name=CX297691; organism=Citrus clementina; type=EST; length=681bp
GAGGTCTACCTAGCTTACGCTTTTTCGCAGGTGCTTATAGAGTTGATATA
TGTGGCATTTCAAACTGTCGTGTATGTTCTGATCCTATACTCCATGATGG
GATTTGCGTGGAAAGCAAAAAGATTCTTCTGGTTCTTGTACATGGTAATG
ATGTCCTTTATGCAATTCACATTGTATGGGATGATGATTGTCGCACTGAC
TCCAGCTCCGCAAATTGGTGCCATACTTTCCGGATTCTTCCTCTCCCTGT
GGAATTTGTTCTCTGGTTTTCTCATTCCTCGCGTGCAAATCCCAATTTGG
TGGAGGTGGTACTACTGGCTCTCTCCCGTGGCTTGGACACTCTATGGCCT
TGTTACAAGTCAAGTTGGTGACATAGAAGGCAACGTGGAAATTCCGGGAA
GCACCGCTACGATGACAGTGAAGCAGCTTCTAAAAGATAGTTTCGGGTTC
AAGTATGACTTCCTTCCGGTTGTTGCTGTAGTCAAACTTGTCTGGCTTCT
CGTCTTCGTCTTTGTGTTTACCCTTGCCATCACCTTAATTAACTTCCAGA
GGAGATAAATAGCTCGAAAATCTCCAACATATGGTAGGAAATGTTTGATG
TAATTGTTAGTCATGAATGAGGCGAGGGGAATAAAAGGTTGTTACCACTT
TGCGCATTCTTTAAAAAAAAAAAAAAAAAAA
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