CX297694

Overview
NameCX297694
Unique NameCX297694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length471
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297694_ssr225 microsatellite CX297694_ssr225:225..236. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10112 contig Ccv1_Contig10112:585..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.599e-19
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GLLQSDQELFST GA T AIV +F  NQTAFF++FV SMI MGN+ PLTG+ GEIR NCRR N
Sbjct:  264 RGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNCRRPN 327          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.047e-18
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 EAPQGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 207
            ++  GLLQSDQELFST G+ T AIV  F  NQT FF+ F  SMI MGN+ PLTG+ GEIRL+C++VNG+
Sbjct:  267 QSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVNGS 335          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.788e-18
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGDLVSS 258
            +GL+QSDQELFSTPGADT  +V  +  N  AFF  FV +MIRMGNL+PLTG QGEIR NCR VN       R   ++  +VSS
Sbjct:  270 KGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNLRPLTGTQGEIRQNCRVVNSR----IRGMENDDGVVSS 348          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.788e-18
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GL+QSDQELFSTPGADT  +V  +  + + FF+ F+ +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  270 KGLIQSDQELFSTPGADTIPLVNQYSSDMSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNCRVVN 333          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.369e-17
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GL+QSDQ LFSTPGADT  +V  +  N   FF  FV +MIRMGNLKPLTG QGEIR NCR VN
Sbjct:  270 KGLIQSDQVLFSTPGADTIPLVNQYSSNTFVFFGAFVDAMIRMGNLKPLTGTQGEIRQNCRVVN 333          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.400e-17
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 EAPQGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 207
            ++  GLLQSDQELFST G+ T A+V  F  NQT FF+ F  SMI MGN+ PLTG+ GEIRL+C++V+G+
Sbjct:  237 QSNNGLLQSDQELFSTLGSATIAVVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVDGS 305          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.746e-17
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GL+QSDQELFSTPGADT  +V  +  N  +FF  F  +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  241 KGLIQSDQELFSTPGADTIPLVNLYSSNTLSFFGAFADAMIRMGNLRPLTGTQGEIRQNCRVVN 304          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.505e-17
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 EAPQGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGDL 249
            ++  GLLQSDQELFS  G+ T  IV  F  NQT FF+ FV SMI+MGN+ PLTG+ GEIR +C+ VNG +     S++  GD+
Sbjct:  268 QSNNGLLQSDQELFSNTGSATVPIVNSFASNQTLFFEAFVQSMIKMGNISPLTGSSGEIRQDCKVVNGQS-----SATEAGDI 345          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PERX_TOBAC (Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.725e-16
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 EAPQGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            ++ QGLLQ+DQELFST G+ T AIV  +  +QT FF +FV SMI++GN+ PLTG  G+IR +C+RVN
Sbjct:  258 QSNQGLLQTDQELFSTSGSATIAIVNRYAGSQTQFFDDFVSSMIKLGNISPLTGTNGQIRTDCKRVN 324          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.849e-15
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 EAPQGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 210
            E  +GL+QSDQELFS+P A DT  +V  F  +   FF  FV +M RMGN+ PLTG QG+IRLNCR VN N+
Sbjct:  268 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 338          
The following BLAST results are available for this feature:
BLAST of CX297694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PER15_IPOBA3.599e-1971.88Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER53_ARATH3.047e-1862.32Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PER3_ARMRU6.788e-1857.83Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PER22_ARATH6.788e-1864.06Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER23_ARATH3.369e-1767.19Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PERA2_ARMRU4.400e-1759.42Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PERE5_ARMRU5.746e-1765.63Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER54_ARATH7.505e-1753.01Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PERX_TOBAC3.725e-1658.21Lignin-forming anionic peroxidase OS=Nicotiana tab... [more]
PER1A_ARMRU1.849e-1557.75Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]

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Properties
Property NameValue
Genbank descriptionC06004C04SK RindPdig24 Citrus clementina cDNA clone C06004C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297694 ID=CX297694; Name=CX297694; organism=Citrus clementina; type=EST; length=471bp
GAGGCTCCGCAAGGCCTTCTGCAGAGTGATCAAGAGTTGTTTTCGACTCC
TGGTGCCGATACCGCTGCCATTGTCGAGGACTTTGGGAGGAACCAGACTG
CTTTCTTTAAAAACTTTGTGATCTCAATGATAAGAATGGGCAATTTGAAA
CCACTGACAGGAAATCAAGGGGAGATTAGATTGAACTGCAGGAGGGTCAA
TGGAAACAATAATATTGCAACAAGATCATCATCATCGGAGGGTGATTTGG
TCAGCTCTTTCTAATAAGCTAGCTTGCGGCATATGCGAGAGAGTTTTTGT
GCTTAACAAACTCGAATTTAATCTTATCGTTTGGCCTGAAACATGTTATG
TGTTTTCAAATAAATTAACTATCAAACTTGAGTTTAATCTAATTTTCTTG
TCTGAAACATGCTATGTATTTTCAAATAAATTAATTAAACTTGTGTTTTT
GTGTAAAAAAAAAAAAAAAAA
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