CX297698

Overview
NameCX297698
Unique NameCX297698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15491 contig Ccv1_Contig15491:369..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_TOBAC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.381e-97
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 549
            E +RQLDGAHVEFL+GVANPLGIKVSDKMDP+ LVKLIEILNP NK GRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+
Sbjct:  352 ERTRQLDGAHVEFLRGVANPLGIKVSDKMDPSALVKLIEILNPDNKAGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 534          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROG_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.356e-97
Identity = 172/183 (93.99%), Postives = 180/183 (98.36%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 549
            E +RQLDGAHVEFL+G+ANPLGIKVSDKMDP+ LVKLIEILNPQNK GRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+
Sbjct:  351 ERTRQLDGAHVEFLRGIANPLGIKVSDKMDPSALVKLIEILNPQNKAGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 2.356e-97
Identity = 172/183 (93.99%), Postives = 180/183 (98.36%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 549
            E +RQLDGAHVEFL+G+ANPLGIKVSDKMDP+ LVKLIEILNPQNK GRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+
Sbjct:  351 ERTRQLDGAHVEFLRGIANPLGIKVSDKMDPSALVKLIEILNPQNKAGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROG_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.880e-95
Identity = 167/183 (91.26%), Postives = 177/183 (96.72%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 549
            E +RQLDGAHVEFL+GVANPLGIKVSDKM+P +LVKLIEILNP NKPGRITIITRMGAENMRVKLPHLIRAVR SGQIVTW++DPMHGNTIKAPCGLKTRPFDSI AEVRAFFDVH+QEGSHPGG+HLEMTGQNVTECIGGSRTVTFDDLS RYHTHCDPRLNASQSLELAFIIAERLR+RR+
Sbjct:  342 ERTRQLDGAHVEFLRGVANPLGIKVSDKMNPRDLVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAERLRRRRM 524          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 2.064e-93
Identity = 166/183 (90.71%), Postives = 176/183 (96.17%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 549
            E +RQLDGAHVEFL+GVANPLGIKVSDKM+P ELVKLIEILNP NKPGRITIITRMGAENMRVKLPHLIRAVR +GQIVTW++DPMHGNTIKAPCGLKTRPFDSI AEVRAFFDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDL  RYHTHCDPRLNASQSLEL+FIIAERLR++RI
Sbjct:  357 ERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAERLRRKRI 538          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 7.843e-93
Identity = 164/182 (90.11%), Postives = 173/182 (95.05%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 546
            E +RQLDGAHVEFL+G+ANPLGIKVS+KMDP ELVKL+EILNP NKPGRIT+I RMGAENMRVKLPHLIRAVRRSGQIVTWV DPMHGNTIKAPCGLKTR FDSI AEVRAF DVHEQEGSH GG+HLEMTGQNVTECIGGSRTVT+DDLSSRYHTHCDPRLNASQSLELAFI+AERLRKRR
Sbjct:  337 ERTRQLDGAHVEFLRGIANPLGIKVSNKMDPFELVKLVEILNPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCGLKTRAFDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHTHCDPRLNASQSLELAFIVAERLRKRR 518          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROG_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 8.672e-92
Identity = 160/183 (87.43%), Postives = 173/183 (94.54%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 549
            E +RQLDGAHVEFL+GVANPLGIKVS KMDPNEL+KLI+ILNP NKPGRIT+I RMGAENMRVKL HL+RAVR +GQIVTWV DPMHGNTIKAPCGLKTR FDSI AEVRAFFDVHEQEGSHPGG+HLEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+
Sbjct:  324 ERTRQLDGAHVEFLRGVANPLGIKVSQKMDPNELIKLIDILNPANKPGRITVIVRMGAENMRVKLSHLVRAVRGAGQIVTWVCDPMHGNTIKAPCGLKTRAFDSILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROG_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.758e-90
Identity = 160/183 (87.43%), Postives = 175/183 (95.63%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 549
            E +RQLDGAHVEFL+G+ANPLGIKVSDKM P+ELVKLIEILNPQNKPGRIT+I RMGAENMRVKLP+LIRAVR +GQIVTWVSDPMHGNTI AP GLKTR FD+IRAE+RAFFDVH+QEGS PGGVHLEMTGQNVTEC+GGSRT+T++DLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+
Sbjct:  314 ERTRQLDGAHVEFLRGIANPLGIKVSDKMVPSELVKLIEILNPQNKPGRITVIVRMGAENMRVKLPNLIRAVRGAGQIVTWVSDPMHGNTIMAPGGLKTRSFDAIRAELRAFFDVHDQEGSFPGGVHLEMTGQNVTECVGGSRTITYNDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 496          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.808e-89
Identity = 157/183 (85.79%), Postives = 171/183 (93.44%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 549
            E +RQLDGAHVEFL+GVANPLGIKVS KMDP EL+KLI+ILNP NKPGRIT+I RMGAENMRVKL HL+RAVR +GQIVTWV DPMHGNTIKAPCGLKTR FDSI+AEVRAFFDVHEQEGSHP  +HLEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+
Sbjct:  324 ERTRQLDGAHVEFLRGVANPLGIKVSQKMDPKELIKLIDILNPANKPGRITVIVRMGAENMRVKLSHLVRAVRGAGQIVTWVCDPMHGNTIKAPCGLKTRAFDSIQAEVRAFFDVHEQEGSHPWCIHLEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.696e-79
Identity = 146/180 (81.11%), Postives = 157/180 (87.22%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 540
            E +RQLDGAHVEFL+GVANPLGIKVS KMDPNELV LIEILNP NKPGRIT+I RMGAENMRVKLPHLIRAVR +GQIVTWV DPMHGNTIKAPCGLKTR FD+I AEVRAF+DVHEQEG+ PG           TEC+GGSRT+T+DD  +RYHTHCDPRLNASQSLELAFIIAERLRK
Sbjct:  315 ERTRQLDGAHVEFLRGVANPLGIKVSQKMDPNELVNLIEILNPTNKPGRITVIVRMGAENMRVKLPHLIRAVRGAGQIVTWVCDPMHGNTIKAPCGLKTRAFDAILAEVRAFYDVHEQEGTLPG-----------TECVGGSRTITYDDRQTRYHTHCDPRLNASQSLELAFIIAERLRK 483          
The following BLAST results are available for this feature:
BLAST of CX297698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AROF_TOBAC1.381e-9795.08Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLLC2.356e-9793.99Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLTU2.356e-9793.99Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ORYSJ2.880e-9591.26Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_ORYSJ2.064e-9390.71Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ARATH7.843e-9390.11Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLTU8.672e-9287.43Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_ARATH4.758e-9087.43Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLLC1.808e-8985.79Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_CATRO1.696e-7981.11Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionC06004C08SK RindPdig24 Citrus clementina cDNA clone C06004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297698 ID=CX297698; Name=CX297698; organism=Citrus clementina; type=EST; length=762bp
GAGGCGTCCAGGCAGCTGGATGGTGCACATGTTGAGTTTTTGAAAGGTGT
AGCAAATCCCCTTGGCATTAAGGTCAGTGATAAGATGGATCCTAATGAGC
TAGTGAAGCTTATTGAGATTTTGAATCCTCAGAATAAACCGGGGAGGATA
ACTATTATCACTAGAATGGGTGCTGAGAACATGAGAGTGAAGCTTCCTCA
TCTAATTAGGGCAGTCCGCCGCTCTGGCCAAATTGTTACATGGGTCAGTG
ACCCTATGCATGGTAACACCATCAAGGCTCCCTGCGGCCTGAAAACTCGT
CCCTTCGATTCTATCAGGGCTGAAGTGAGAGCATTCTTTGATGTGCATGA
GCAAGAAGGAAGTCACCCGGGAGGAGTACATTTGGAGATGACAGGCCAGA
ATGTGACAGAGTGCATCGGTGGGTCAAGAACAGTGACATTCGACGACTTG
AGTTCACGCTACCACACCCACTGTGACCCTAGGCTTAATGCTTCACAGTC
ACTTGAGCTTGCCTTCATCATTGCCGAGCGCCTCAGAAAGAGGAGGATTA
GCTCACAGCAACCTCTTGCCTCTTCGTCTCTCCTGTAGAATGGCCTGAGT
ACTGCTGGCATATATTATTATTTTTCTTGAAGTTTAGCAGCTGTGCTAGT
ATTTTTAATTTTGGTTTTTTGATTTAATTTATGTCATGTACTGAATGTGT
ATATTAAAAGGACATGATGGCTTTGAGACTTAGGAACAAGGAATAAAAAT
ATGGGATTTATG
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