CX297705

Overview
NameCX297705
Unique NameCX297705
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297705_ssr44 microsatellite CX297705_ssr44:44..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.136e-18
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  520 MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKK 708
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKK
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKK 63          

HSP 2 Score: 21.557 bits (44), Expect = 9.136e-18
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  702 QETRHYLPN 728
            ++TRHYLPN
Sbjct:   62 KKTRHYLPN 70          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.136e-18
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  520 MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKK 708
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKK
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKK 63          

HSP 2 Score: 21.557 bits (44), Expect = 9.136e-18
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  702 QETRHYLPN 728
            ++TRHYLPN
Sbjct:   62 KKTRHYLPN 70          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KK   + P
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLP 71          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KK   + P
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLP 71          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KK   + P
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLP 71          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KK   + P
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLP 71          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KK   + P
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLP 71          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KK   + P
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLP 71          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR   +K NWR+PKGID+RVRR+FKG  LMPNIGYGS+KK   + P
Sbjct:   21 RHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 70          
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK   + P
Sbjct:   21 RHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 70          
The following BLAST results are available for this feature:
BLAST of CX297705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RL322_ARATH9.136e-1866.6760S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL321_ARATH9.136e-1866.6760S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL32_RAT5.663e-1364.0060S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG5.663e-1364.0060S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE5.663e-1364.0060S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA5.663e-1364.0060S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN5.663e-1364.0060S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_BOVIN5.663e-1364.0060S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_APIME4.794e-1266.0060S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32_SPOFR1.395e-1164.0060S ribosomal protein L32 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionC06004D03SK RindPdig24 Citrus clementina cDNA clone C06004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297705 ID=CX297705; Name=CX297705; organism=Citrus clementina; type=EST; length=729bp
GAGGTTTTTTCTTACAAGCGCTACTATATTGATCTCACAAGATATAATAA
TAATAACTCACAAAAAGAATCCTTTGCACTTGAATACATAATTAATCGTA
CTTGAAAAAATAACAACAACAATAACCTAGAGACAAAATGACAAAATAAA
CGCGGATCAGGTGTAAGGAACAGGAAGCACATGGTGAGTAGCTACATTGT
ATACTCACGAACACTGGACTGGCTTCGCGTTACTAATTTCTCAATGACCA
GCGCAGCAACTCGCGATAGGTTCAACTCCCTCAAAGAAGATAAATTCACA
TCACTTCTGGATGACTTGAGGCAATGTGTACAATGTATCCACCATCTCAA
GGCTGATATCCTCGTAAATCCTTCAACTTTCGTCAGCAAAAGGATCAATG
AAATGTGCATAAATGGCTAAGTAAAAGAGCCCAACACAAATAGCTTCCAT
TTTATTTCCCTGTATATTCATAGCACCAAACAGTTGGTTTCCACATCTGC
AACTATCATATCTGAAAAAATGGCTGTTCCTTTGCTGACCAAGAAGATAG
TGAAGAAGCGTCTCAAGAAGTTCAAGAGGCCCCAGAGTGACAGGAAGATA
TCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGATTCACGTGTCAG
GAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGGCTACGGCTCGG
ACAAGAAACACGCCACTATCTGCCCAATG
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