CX297709

Overview
NameCX297709
Unique NameCX297709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length388
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297709 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.667e-16
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 3
Query:    6 ISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 134
            ISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  549 ISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CX297709 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.570e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    6 ISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 131
            ISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  537 ISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CX297709 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 3
Query:    6 ISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 134
            ISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  539 ISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CX297709 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:    6 ISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 125
            ISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  555 ISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
The following BLAST results are available for this feature:
BLAST of CX297709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILV5_ARATH2.667e-1693.02Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_ORYSJ6.570e-1588.10Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_PEA4.258e-1483.72Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_SPIOL1.789e-1287.50Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
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Properties
Property NameValue
Genbank descriptionC06004D07SK RindPdig24 Citrus clementina cDNA clone C06004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297709 ID=CX297709; Name=CX297709; organism=Citrus clementina; type=EST; length=388bp
GAGGCATCAGCAACTTCCTTTCTGATCCAGTCCATGGAGCCATTGAAGTC
TGTGCTCAGTTGAGACCAACTGTTGACATTTCAGTGCCACCAGATGCAGA
TTTTGTGCGCCCAGAGTTGCGTCAGGGTAGCAATTGAGTCCTGGTGAGTC
CTTAATTTTTTTGTTTCTAGCCCAAAAATAATTCCCCCTAGGGATATTGG
AGGTAGAGACTTTGCTTAGTCGTGTGAGTTGCCGCTTATTTATTTAGTGT
GCTGGGCGAGTGTTGCACTATGTCCGGTTTTGTTGAAGAAGACATGAGAA
TATGCTTCTGGTTTTTGAATTTGGTGGAATAATAGTATGTTTCCGAGGAA
TGCGCTGACNGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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