CX297720

Overview
NameCX297720
Unique NameCX297720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig787 contig Ccv1_Contig787:468..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.943e-24
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 3
Query:    6 YTLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALKNPAWL 191
            + LMRALRVG+VWINCFDV DA+IPFGGYK SG GREKG YSL+NYLQVKAVVT+LKNPAWL
Sbjct:  473 HRLMRALRVGTVWINCFDVLDASIPFGGYKMSGIGREKGIYSLNNYLQVKAVVTSLKNPAWL 534          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.818e-22
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 3
Query:   18 RALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALKNPAWL 191
            RAL+ G+VW+NCFDVFDAAIPFGGYK SG GREKG YSL+NYLQ+KAVVTAL  PAW+
Sbjct:  481 RALKAGTVWVNCFDVFDAAIPFGGYKMSGNGREKGIYSLNNYLQIKAVVTALNKPAWI 538          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.046e-14
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 3
Query:   24 LRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALKN 179
            L+ G+VW+NC++VFDAA PFGGYKQSG GRE GSY+L NY +VK+V   L++
Sbjct:  444 LQAGTVWVNCYNVFDAASPFGGYKQSGLGREMGSYALDNYTEVKSVWVNLED 495          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            L +AL+ G+VWINC+DVF A  PFGGYK SG GRE G Y L  Y +VK V
Sbjct:  461 LSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 510          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            L +AL+ G+VWINC+DVF A  PFGGYK SG GRE G Y L  Y +VK V
Sbjct:  461 LSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 510          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            L +AL+ G+VWINC+DVF A  PFGGYK SG GRE G Y L  Y +VK V
Sbjct:  442 LSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 491          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            L +AL+ G+VWINC+DVF A  PFGGYK SG GRE G Y L  Y +VK V
Sbjct:  442 LSQALQAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLQAYTEVKTV 491          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            L +AL+ G+VW+NC+DVF A  PFGGYK SG GRE G Y L  Y +VK V
Sbjct:  459 LSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 508          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 3
Query:    9 TLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTALKNPAWL 191
            T+ R+++ G +W+NC+  FD   P+GGYK SG  RE G  +L NYLQ K+VV  L N  W+
Sbjct:  441 TVSRSIKAGIIWVNCYFGFDLDCPYGGYKMSGNCRESGMDALDNYLQTKSVVMPLHNSPWM 501          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            L +AL+ G+VW+NC+DVF A  PFGGYK SG GRE G Y L  Y +VK V
Sbjct:  463 LSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTV 512          
The following BLAST results are available for this feature:
BLAST of CX297720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
AL2B7_ARATH1.943e-2483.87Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL2B4_ARATH1.818e-2279.31Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
ALDH4_BACSU9.046e-1463.46Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
ALDH2_RAT8.466e-1262.00Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH2_MOUSE8.466e-1262.00Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
ALDH2_MESAU8.466e-1262.00Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_HORSE8.466e-1262.00Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
ALDH2_HUMAN1.106e-1160.00Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
AL2C4_ARATH1.444e-1147.54Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
ALDH2_PIG1.886e-1160.00Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]

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Properties
Property NameValue
Genbank descriptionC06004E06SK RindPdig24 Citrus clementina cDNA clone C06004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297720 ID=CX297720; Name=CX297720; organism=Citrus clementina; type=EST; length=563bp
GAGGCTATACTCTGATGCGTGCATTGCGAGTAGGGTCGGTGTGGATTAAC
TGCTTTGATGTGTTTGATGCTGCAATTCCCTTTGGTGGATACAAGCAAAG
CGGGCAGGGAAGAGAGAAGGGTTCTTACAGTCTCAGCAATTACCTGCAAG
TCAAGGCTGTTGTTACTGCCCTTAAGAACCCAGCATGGCTTTAGATCTAA
ACCTTCGCAATAAAGTTTTTCAATAACAATTATGTTAAATCAGATGATGC
CGATGAAATCTCGCTTATTTTGTTTCATTATCTCTATGCATCTTTTTCTA
TTTTGTAAGTATAGTCACTATTTTCTTCGTATGCATATTAGAGACTCAAG
TGAGGCAACACTCTTTTTAAGACCTTCGCTTTTCCTTCTTTTTTTTTTCC
CCTCTCTGTCTTAAATCACGAAAAATATTATTAATAAGGATCGTATCCAG
ATCTCAATATTACATTATATGGATATAGATTTTACTGTATATCTGATCAT
GCCGCTTTTTTTATTTTATTTTGTAAATAGAAATACACATTTAATTAAAA
AAAAAAAAAAAAA
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