CX297727

Overview
NameCX297727
Unique NameCX297727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297727 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-43
Identity = 86/105 (81.90%), Postives = 92/105 (87.62%), Query Frame = 2
Query:  410 IALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGI-----SYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTI 709
            I LIHHAINSGITLLDTSD+YGPHTNEILLGKALKGG RERV LATKFGI       A+GKR + GDPAY RAACEASLKRLDIDCIDLYYQHR+DTRVPIE+T+
Sbjct:   44 IQLIHHAINSGITLLDTSDVYGPHTNEILLGKALKGGTRERVVLATKFGIVLGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITV 148          
BLAST of CX297727 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.948e-43
Identity = 79/100 (79.00%), Postives = 91/100 (91.00%), Query Frame = 2
Query:  410 IALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTI 709
            I LIHHA+++G+T LDTSD+YGPHTNE+LLGKAL+GG+RE+VELATKFG+S+ADGKREI GDPAY R ACE S KRL +DCIDLYYQHRID RVPIEVTI
Sbjct:   44 IKLIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQGGVREKVELATKFGVSFADGKREIHGDPAYVRTACEGSFKRLGVDCIDLYYQHRIDKRVPIEVTI 143          
BLAST of CX297727 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  413 ALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELATKFGISY--ADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIE 700
            A++ HA + G T  D+SD+YG   NE  +G+  K  G R+ + LATKFG       G+  +  +P Y   A + SLKRL IDCIDLYY HR     PIE
Sbjct:   37 AVLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQTGRRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHRFSGETPIE 135          
The following BLAST results are available for this feature:
BLAST of CX297727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
A115_TOBAC2.257e-4381.90Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
IN22_MAIZE2.948e-4379.00IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
YAKC_SCHPO3.755e-1444.44Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionC06004F02SK RindPdig24 Citrus clementina cDNA clone C06004F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297727 ID=CX297727; Name=CX297727; organism=Citrus clementina; type=EST; length=709bp
GTTTCTCATGCATAATTTCATCGACCCAGATCCTCAAAGACCTTGGCTTG
CCCAGAGAATGGCCGTGAGGATACCATATTCTGCTTAAAGATGACAATTG
AATAAGACAAGCATGAGGTTCCCAGCAAATAAGACCGAAATTGAGATCAA
TAAAATCGTACTTGTGTCATGACGAAAGATGTTGTGTGCTTATTACTGTA
GTAATTTAATGGGTGATCAACCCTTCTCTTTCATTTTATTTTTCCTATTA
GAATCTCAAGAGAACTTTAGTATCATACACGCTACGGAGCATTTGTTGTT
TCCTACGATTCAATGGCGTCAGTCGAACATGTACGCATGATCTTCCTGGC
CTCCCAAAAATCATTTTATGAAAATTAGAACTGTTCCTCGTGCCGAATTC
GGCACGAGGATCGCCTTGATCCACCATGCCATTAACAGTGGCATCACTCT
ACTTGACACCTCCGATATTTACGGGCCCCACACCAATGAAATCCTTCTGG
GAAAGGCTTTGAAGGGAGGAATGAGGGAAAGAGTTGAATTGGCTACTAAA
TTTGGTATCAGCTATGCGGATGGTAAAAGGGAAATTCGCGGTGACCCGGC
TTATGCGAGAGCTGCATGTGAGGCCAGCTTGAAGCGTCTGGATATTGATT
GTATTGATCTTTATTACCAACATCGCATTGATACACGAGTTCCCATTGAA
GTCACGATT
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