CX297729

Overview
NameCX297729
Unique NameCX297729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13532 contig Ccv1_Contig13532:6..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 5.681e-81
Identity = 152/194 (78.35%), Postives = 161/194 (82.99%), Query Frame = 1
Query:  103 MEKAINRQQVLLEHLRPSNSSSHNYESILXXXXXXXXXXXXYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLL 684
            MEKAI RQ+VLLEHLRPS+SSSHNYE+ L            Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGLQ           GFYDIGIGAGLESMT NPMAWEGSVNP VK F QAQNCLL
Sbjct:    1 MEKAIERQRVLLEHLRPSSSSSHNYEASLSASACLAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLL 194          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.223e-68
Identity = 134/194 (69.07%), Postives = 148/194 (76.29%), Query Frame = 1
Query:  103 MEKAINRQQVLLEHLRPSNSSSHNYESILXXXXXXXXXXXXYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLL 684
            MEKA  RQ++LL HL+PS+SS    ++ L            Y     YGDDVVIVAA RTALCK+KRG FKDT+PD+LLA VL+A+IEKTNV+PSEVGDIVVGTVL PGSQRASECRMAAFYAGFPETVP+RTVNRQCSSGLQ           GFYDIGIGAGLESMT NP  W+GSVNP VK FEQA NCLL
Sbjct:    1 MEKATERQRILLRHLQPSSSS----DASLSASACLSKDSAAYQ----YGDDVVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPGSQRASECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPRGWKGSVNPNVKKFEQAHNCLL 186          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.839e-56
Identity = 114/199 (57.29%), Postives = 146/199 (73.37%), Query Frame = 1
Query:  103 MEKAINRQQVLLEHLRP---SNSSSHNYESILXXXXXXXXXXXXYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEG--SVNPKVKAFEQAQNCLL 684
            ME+A+ RQ++LL HL P   SNSS  +  S+L                + +GDD+VIVAAYRTA+CK++RGGFKDT PDDLLA VLKAV+E+T++DPSEVGDIVVGTV+APGSQRA ECR+AA++AGFP++VPVRTVNRQCSSGLQ           G+YDIGIGAG+ESM+ + +   G    NP+ + F +A++CLL
Sbjct:    1 MERAMERQKILLRHLNPVSSSNSSLKHEPSLLSPVNCVSEVSPM----AAFGDDIVIVAAYRTAICKARRGGFKDTLPDDLLASVLKAVVERTSLDPSEVGDIVVGTVIAPGSQRAMECRVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMSTDHIPGGGFHGSNPRAQDFPKARDCLL 195          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.564e-30
Identity = 67/144 (46.53%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLL 684
            DVV+V   RTA+C++ RGGFKDT PD+LL+ V+ AV++  N+ P ++GDI VG VL PG+  A   R+A F +  PETVP+ TVNRQCSSGLQ           G YDIG+  G+ESM++      G++  ++   E+A++CL+
Sbjct:   37 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA-GAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLI 179          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 77/191 (40.31%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  115 INRQQVLLEHL--RPSNSSSHNYESILXXXXXXXXXXXXYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL 681
            ++R QV+L HL  RP +SS+                   + + S    DVV+V   RT + ++ RGGFK+T PD+LL+ VL AV++   + P ++GDI VG VL PG+  A   R+A F +G PETVP+ TVNRQCSSGLQ           G YDIG+  G+ESM+++ M   G+++ ++   E+A++CL
Sbjct:    1 MHRLQVVLGHLAGRPESSSA----------LQAAPCSARFPQASA--SDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPGAG-AVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLSGMGNPGNISSRLLESEKARDCL 178          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 66/144 (45.83%), Postives = 94/144 (65.28%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLL 684
            DVV+V   RT + ++ RG FKDT PD+LL+ VL AV++   + P ++GDI VG VL PG+  A   R+A F +G PETVP+ TVNRQCSSGLQ           G YDIG+  G+ESMT++     G+++ ++   E+A++CL+
Sbjct:   37 DVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPGAG-AIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMTLSQRGNHGNISSRLLENEKARDCLI 179          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 75/190 (39.47%), Postives = 111/190 (58.42%), Query Frame = 1
Query:  115 INRQQVLLEHLRPSNSSSHNYESILXXXXXXXXXXXXYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLL 684
            ++R QV+L HL   + SS   ++              + + S    DVV+V   RT + ++ RGGFKDT PD+LL+ VL AV++   + P  +GDI VG VL PG+  A+  R+A F +G PETVP+  VNRQCSSGLQ           G YDIG+  G+ESMT++     G+++ ++   E+A++CL+
Sbjct:    1 MHRLQVVLGHLAGRSESSSALQAA--------PCSAGFPQASA--SDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLQPGAG-AAMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMTLSERGNPGNISSRLLENEKARDCLI 179          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 1
Query:  115 INRQQVLLEHL--RPSNSSSHNYESILXXXXXXXXXXXXYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLL 684
            ++R QV+L HL  RP +SS+                   + + S    DVV+V   RT + ++ RGGFKDT PD+LL+ VL AV++   + P  +GDI VG VL PG+  A   R+A F +G PETVP+  VNRQCSSGLQ           G YDIG+  G+ESM+++     G+++ ++   ++A++CL+
Sbjct:    1 MHRLQVVLGHLAGRPESSSA----------LQAAPCSATFPQASA--SDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGAG-AVMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLSNRGNPGNISSRLLESDKARDCLI 179          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 70/153 (45.75%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  235 TSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNP---KVKAFEQAQNCLL 684
            TS   DDVVI AAYRTA  K  +G FKDT   +LLA +L+ +++++ +DP  +GD+V G VLA G+  A+E R A   AG PETVP   +NRQCSSGL            G  DIGIG G+ESM  +      SV P   K +  E+A+ CL+
Sbjct:   23 TSKNPDDVVITAAYRTAHTKGGKGLFKDTSSSELLASLLEGLVKESKIDPKLIGDVVCGNVLAAGA-GATEHRAACLVAGIPETVPFVALNRQCSSGLMAVNDVANKIRAGQIDIGIGCGVESM--SNQYGPNSVTPFSNKFQNNEEAKKCLI 172          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIKB_CANTR (3-ketoacyl-CoA thiolase B, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  250 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN--PMAWEGSVNPKVKAFEQAQNCLL 684
            DDVVIVAAYRTA+ K  +G F++ + + +L   LK  I+KTN+DPS + D+ +G VL   +  A+E R A   AG P T     VNR CSSGL            G  + G+  G ESM+ N         ++P +    Q + CL+
Sbjct:   25 DDVVIVAAYRTAIGKGFKGSFRNVHSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAA-GATEHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMSTNYRDPRVAPRIDPHLADDAQMEKCLI 170          
The following BLAST results are available for this feature:
BLAST of CX297729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
THIK2_ARATH5.681e-8178.353-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH4.223e-6869.073-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
THIK5_ARATH2.839e-5657.293-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
THIK_HUMAN4.564e-3046.533-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
THIKA_MOUSE3.864e-2940.313-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIKB_MOUSE1.124e-2845.833-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKB_RAT1.468e-2839.473-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKA_RAT2.120e-2739.063-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIK_YARLI3.385e-2545.753-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
THIKB_CANTR3.069e-1838.103-ketoacyl-CoA thiolase B, peroxisomal OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionC06004F04SK RindPdig24 Citrus clementina cDNA clone C06004F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297729 ID=CX297729; Name=CX297729; organism=Citrus clementina; type=EST; length=686bp
CCAAGGGAAAAAAAACATTCAAAGCTAAACGCTAAAAGGATCAAAAAGGA
AAAAAAAAAAAAGAAAAAAAGGATCCAATATTTTCGAATCAAACGAGAAA
TAATGGAGAAAGCAATCAACAGACAGCAAGTGTTGCTCGAACATCTTCGC
CCTTCTAATTCCTCCTCTCACAATTACGAGTCTATTCTCTCCGCGTCGGC
ATGTGCAGCTGGAGATAGCGCGGCGTATCATAGGACGTCTGTGTACGGTG
ATGATGTGGTGATTGTGGCAGCTTATAGGACTGCACTTTGCAAATCAAAA
CGAGGTGGTTTCAAGGACACTTATCCTGATGATCTGCTTGCACCTGTTTT
GAAGGCAGTGATAGAAAAAACAAATGTAGATCCAAGTGAAGTTGGAGACA
TTGTTGTGGGTACAGTTTTGGCACCAGGGTCTCAAAGAGCAAGTGAATGC
AGGATGGCTGCATTCTATGCTGGTTTCCCTGAAACTGTGCCTGTTAGAAC
TGTGAACAGGCAGTGCTCTTCTGGGCTTCAGGCTGTTGCTGATGTTGCTG
CTGCTATTAAAGCTGGCTTTTATGACATTGGTATTGGTGCTGGGCTGGAA
TCCATGACAGTCAATCCAATGGCTTGGGAAGGATCAGTAAATCCAAAAGT
AAAAGCCTTTGAACAAGCCCAGAATTGCCTCCTTCC
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