CX297736

Overview
NameCX297736
Unique NameCX297736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_RAT (Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 111/216 (51.39%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEXISQCKT 659
            +DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L      +   FL Y   SQC++
Sbjct:   66 VDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKSGMNMSFSFLNYAQSSQCRS 281          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_XENTR (Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.838e-59
Identity = 112/216 (51.85%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEXISQCKT 659
            +DP+   RVF+LGPSHH    +CALST  +Y+TP+ DL +D +V  +L  TG FE M +  DE EHS+EMHLPY AK  E H   + IVP+LVGA++   E  +G+LF+KY+ DP+N F +SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP  F  YL +Y NTICGRHPI V L+    L      +   FL Y   SQC++
Sbjct:   66 VDPSVTRRVFILGPSHHVALSRCALSTVDIYRTPLYDLHIDQKVYGDLWKTGMFERMSLQTDEDEHSIEMHLPYTAKTMESHKDDLTIVPVLVGALSESKEQEFGKLFSKYLADPTNLFVISSDFCHWGQRFRYTYYDESQGEIYRSIENLDKMGMGIIEQLDPVQFSNYLKKYHNTICGRHPIGVLLNAATELQKNGVNMSFSFLNYAQSSQCRS 281          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_XENLA (Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.838e-59
Identity = 112/216 (51.85%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEXISQCKT 659
            +DP+   RVF+LGPSHH    +CALST  +Y+TP+ DL +D +V  EL  TG FE M +  DE EHS+EMHLPY AK  E H   + IVP+LVGA++   E  +G++F+KY+ DP+N F +SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP  F  YL +Y NTICGRHPI V L+    L      +   FL Y   SQC++
Sbjct:   66 VDPSVTRRVFILGPSHHVALSRCALSTVDIYRTPLYDLHVDQKVYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDDLTIVPVLVGALSESKEQEFGKVFSKYLADPTNLFVISSDFCHWGQRFRYTYYDESQGEIYRSIENLDKMGMSIIEQLDPVQFSNYLKKYHNTICGRHPIGVLLNAATELQKNGVNMSFSFLNYAQSSQCRS 281          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_MOUSE (Protein MEMO1 OS=Mus musculus GN=Memo1 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.401e-59
Identity = 111/216 (51.39%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEXISQCKT 659
            +DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L      +   FL Y   SQC++
Sbjct:   66 VDPSVTRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRS 281          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_MACFA (Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 111/215 (51.63%), Postives = 142/215 (66.05%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEXISQCK 656
            +DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L      +   FL Y   SQC+
Sbjct:   66 VDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCR 280          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_HUMAN (Protein MEMO1 OS=Homo sapiens GN=MEMO1 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 111/215 (51.63%), Postives = 142/215 (66.05%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEXISQCK 656
            +DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L      +   FL Y   SQC+
Sbjct:   66 VDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCR 280          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_DANRE (Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.349e-59
Identity = 112/215 (52.09%), Postives = 140/215 (65.12%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTK---IKIKFLRYEXISQCK 656
            +DP+   RVF+LGPSHH    +CALS A VY+TP+ DL +D +V  +L  TG FE M +  DE EHS+EMHLPY AK  E H     IVP+LVGA++   E  YG+L +KY+ DPSN F +S DFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+ +         +   FL Y   SQC+
Sbjct:   66 VDPSITRRVFILGPSHHVPLSRCALSPAEVYRTPLYDLRIDQKVYADLWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMENHKDEFSIVPVLVGALSGSKEQEYGKLLSKYLADPSNLFIISPDFCHWGQRFRYTYYDESQGEIYRSIEHLDKMGMGIIEQLDPISFSNYLKKYHNTICGRHPIGVLLNAVAELKKNGIDMNFSFLNYAQSSQCR 280          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_BOVIN (Protein MEMO1 OS=Bos taurus GN=MEMO1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.539e-57
Identity = 103/191 (53.93%), Postives = 134/191 (70.16%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHML 593
            +DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ +PSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+ +
Sbjct:   66 VDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLAEPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAI 256          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: MEMO1_DICDI (Protein MEMO1 homolog OS=Dictyostelium discoideum GN=memo1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.154e-53
Identity = 105/211 (49.76%), Postives = 137/211 (64.93%), Query Frame = 3
Query:   24 NIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIK--IVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEXISQ 650
            N+ P +  RVF+LGPSHH Y   C L+    ++TPIG+L +D +   +L  TG F      VDE EHS+E+ LPY+AKV E  L++  IVPI+VG+++ + E +YG++ A Y DDP NFF +SSDFCHWG RF Y  Y+ K   I+K IE LD+ GM+IIE+GDP  F KYL E  NTICGR PI+V L +  N   K  I  L YE  S+
Sbjct:   60 NLIPENYKRVFILGPSHHVYMKTCGLTKLDTWETPIGNLKVDKDTTNKLFDTGSFIWNTKSVDEDEHSLELQLPYIAKVAEKRLLELSIVPIMVGSLSIDLEELYGKILAPYFDDPENFFVISSDFCHWGERFGYTRYENKEVPIYKYIEELDRKGMEIIESGDPVQFSKYLKETKNTICGRCPIAVMLWITKNSQFKYNISSLYYEQSSK 270          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: TG253_CAEEL (UPF0103 protein tag-253 OS=Caenorhabditis elegans GN=tag-253 PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 88/184 (47.83%), Postives = 126/184 (68.48%), Query Frame = 3
Query:   36 TSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGV-IHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFL 584
            +++ RVF+LGPSH      CA++T + Y+TP+GDL +D ++ EEL+AT  F+LMD   +E+EHS+EM LP++AKV       IVP+LVG++    +  YG +FA Y++DP N F +SSDFCHWG RF++  YD+   + I++ I  +DK GM  IET +P AF  YL +  NTICGR+PI + L
Sbjct:  120 SAVERVFILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELRATRHFDLMDRRDEESEHSIEMQLPFIAKVMGSKRYTIVPVLVGSLPGSRQQTYGNIFAHYMEDPRNLFVISSDFCHWGERFSFSPYDRHSSIPIYEQITNMDKQGMSAIETLNPAAFNDYLKKTQNTICGRNPILIML 303          
The following BLAST results are available for this feature:
BLAST of CX297736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MEMO1_RAT1.408e-5951.39Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=2 S... [more]
MEMO1_XENTR1.838e-5951.85Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 ... [more]
MEMO1_XENLA1.838e-5951.85Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1[more]
MEMO1_MOUSE2.401e-5951.39Protein MEMO1 OS=Mus musculus GN=Memo1 PE=1 SV=1[more]
MEMO1_MACFA3.136e-5951.63Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2... [more]
MEMO1_HUMAN3.136e-5951.63Protein MEMO1 OS=Homo sapiens GN=MEMO1 PE=1 SV=1[more]
MEMO1_DANRE5.349e-5952.09Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1[more]
MEMO1_BOVIN6.539e-5753.93Protein MEMO1 OS=Bos taurus GN=MEMO1 PE=2 SV=1[more]
MEMO1_DICDI1.154e-5349.76Protein MEMO1 homolog OS=Dictyostelium discoideum ... [more]
TG253_CAEEL1.367e-4647.83UPF0103 protein tag-253 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionC06004F11SK RindPdig24 Citrus clementina cDNA clone C06004F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297736 ID=CX297736; Name=CX297736; organism=Citrus clementina; type=EST; length=741bp
GAGGCTGCTGCCTACGCATTTGGAACATAGACCCAACTAGCATTTCTCGG
GTATTCCTTCTTGGTCCATCTCACCATTATTACACTCCTAAGTGTGCTCT
TTCGACAGCAACAGTTTACAAGACTCCCATAGGGGATCTACCTCTTGATT
TGGAAGTCATCGAGGAGCTAAAAGCTACAGGAAAATTTGAATTGATGGAT
ATTTGCGTAGATGAGGCTGAACATAGCATGGAAATGCACTTGCCATACCT
TGCAAAAGTATTTGAGGGGCACCTGATAAAAATTGTGCCCATTCTTGTCG
GTGCTGTCAATGCTGAAAATGAAGCAATGTATGGAAGGTTGTTTGCCAAA
TATGTAGATGATCCCAGCAATTTCTTCTCCGTGTCCTCAGATTTTTGTCA
CTGGGGTTCTCGGTTCAATTACATGCACTATGACAAGAAACATGGAGTCA
TTCACAAATCTATTGAAGCCTTGGACAAAATGGGCATGGATATAATAGAA
ACTGGAGATCCTGACGCATTCAAAAAGTATTTATTGGAGTATGACAACAC
AATTTGTGGTCGGCATCCAATTAGTGTTTTTCTCCATATGTTGGGGAACT
GCTCCACAAAGATAAAAATCAAATTTCTTCGATATGAACNAATCAGCCAA
TGCAAAACGAAGAGAGATAGTAGTGTAAGTTATGCATCTGCAGCAGCTAA
GGTGGATGCTTGAAGCTGTGAGAAATATTATGTTGGATTTA
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