CX297737

Overview
NameCX297737
Unique NameCX297737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10921 contig Ccv1_Contig10921:603..1121. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT1_ARATH (ADP,ATP carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.723e-24
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVLF 224
            GAGLASYPIDTVRRRMMMTSGEAVKYKSSL AF++I+KNEG KSLFKGAGANILR          YDKL L++F
Sbjct:  299 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQILKNEGAKSLFKGAGANILRAVAGAGVLSGYDKLQLIVF 372          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT2_SOLTU (ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.931e-23
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVLF 224
            GAGLASYPIDTVRRRMMMTSGEAVKYKSS  AF +I+KNEG KSLFKGAGAN+LR          YDKL +++F
Sbjct:  304 GAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFNQILKNEGPKSLFKGAGANVLRAVAGAGVLAGYDKLQVIVF 377          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT2_ARATH (ADP,ATP carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=ANT2 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.931e-23
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVLF 224
            GAGLASYPIDTVRRRMMMTSGEAVKYKSS  AF +I+K EG KSLFKGAGANILR          YDKL L++F
Sbjct:  303 GAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQIVKKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQLIVF 376          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT1_WHEAT (ADP,ATP carrier protein 1, mitochondrial OS=Triticum aestivum GN=ANT-G1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.135e-23
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVLF 224
            GAGLASYPIDTVRRRMMMTSGEAVKYKSSL AFQ+I+K EG KSLFKGAGANILR          YD+L ++ F
Sbjct:  249 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFQQILKKEGAKSLFKGAGANILRAIAGAGVLSGYDQLQILFF 322          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT_ORYSJ (ADP,ATP carrier protein, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0718900 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVLF 224
            GAGLASYPIDTVRRRMMMTSGEAVKYKSS+ AF +I+KNEG KSLFKGAGANILR          YD+L ++ F
Sbjct:  300 GAGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQILFF 373          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT2_MAIZE (ADP,ATP carrier protein 2, mitochondrial OS=Zea mays GN=ANT2 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVLF 224
            GAGLASYPIDTVRRRMMMTSGEAVKYKSSL AFQ+I+K EG KSLFKGAGANILR          YD+L ++ F
Sbjct:  305 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFQQILKKEGPKSLFKGAGANILRAIAGAGVLSGYDQLQILFF 378          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT1_SOLTU (ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVL 221
            GAGLASYPIDTVRRRMMMTSGEAVKYKSSL AF +I+KNEG KSLFKGAGANILR          YDKL +++
Sbjct:  304 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQVLV 376          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT1_MAIZE (ADP,ATP carrier protein 1, mitochondrial OS=Zea mays GN=ANT1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVLF 224
            GAGLASYPIDTVRRRMMMTSGEAVKYKSSL AFQ+I+K EG KSLFKGAGANILR          YD+L ++ F
Sbjct:  305 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFQQILKKEGPKSLFKGAGANILRAIAGAGVLSGYDQLQILFF 378          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT_CHLRE (ADP,ATP carrier protein OS=Chlamydomonas reinhardtii GN=ABT PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.758e-23
Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVL 221
            GAGLASYPIDT+RRRMMMTSG AVKY SS H FQEI+KNEG KSLFKGAGANILR          YD+L ++L
Sbjct:  226 GAGLASYPIDTIRRRMMMTSGSAVKYNSSFHCFQEIVKNEGMKSLFKGAGANILRAVAGAGVLAGYDQLQVIL 298          
BLAST of CX297737 vs. ExPASy Swiss-Prot
Match: ADT1_GOSHI (ADP,ATP carrier protein 1, mitochondrial OS=Gossypium hirsutum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.951e-22
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLHLVLF 224
            GA LASYPIDTVRRRMMMTSG+AVKYKSSL AF +I+KNEG KSLFKGAG+NILR          YDKL L++F
Sbjct:  304 GAALASYPIDTVRRRMMMTSGKAVKYKSSLDAFSQILKNEGGKSLFKGAGSNILRAIAGAGVLAGYDKLQLIVF 377          
The following BLAST results are available for this feature:
BLAST of CX297737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ADT1_ARATH2.723e-2475.68ADP,ATP carrier protein 1, mitochondrial OS=Arabid... [more]
ADT2_SOLTU3.931e-2371.62ADP,ATP carrier protein, mitochondrial (Fragment) ... [more]
ADT2_ARATH3.931e-2372.97ADP,ATP carrier protein 2, mitochondrial OS=Arabid... [more]
ADT1_WHEAT5.135e-2372.97ADP,ATP carrier protein 1, mitochondrial OS=Tritic... [more]
ADT_ORYSJ6.706e-2371.62ADP,ATP carrier protein, mitochondrial OS=Oryza sa... [more]
ADT2_MAIZE6.706e-2372.97ADP,ATP carrier protein 2, mitochondrial OS=Zea ma... [more]
ADT1_SOLTU6.706e-2373.97ADP,ATP carrier protein, mitochondrial OS=Solanum ... [more]
ADT1_MAIZE6.706e-2372.97ADP,ATP carrier protein 1, mitochondrial OS=Zea ma... [more]
ADT_CHLRE8.758e-2371.23ADP,ATP carrier protein OS=Chlamydomonas reinhardt... [more]
ADT1_GOSHI1.951e-2271.62ADP,ATP carrier protein 1, mitochondrial OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionC06004F12SK RindPdig24 Citrus clementina cDNA clone C06004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297737 ID=CX297737; Name=CX297737; organism=Citrus clementina; type=EST; length=519bp
TTGGTGCTGGTTTGGCTTCTTACCCAATTGATACGGTGCGTAGAAGGATG
ATGATGACCTCTGGAGAAGCTGTGAAGTACAAGAGCTCTTTGCATGCATT
CCAGGAAATTATAAAGAATGAAGGCACTAAATCACTCTTCAAAGGTGCTG
GTGCAAACATTCTGCGTGCTGTGGCAGGAGCTGGTGTGCTTGCCGGTTAT
GACAAGCTGCATCTGGTTCTATTTGGCAAGAAATACGGATCCGGTGGTGG
CGGTTAATACTTGTACAAGATGTTGGTGAAAATTCTATAGGTGCTCTTCT
CAAGTTTGAATAATTTTGGATGATCGATAGTGTTATTAATATTTATCCGG
TTTTTAGGGATTTGATAAAAGAAAAGATTATAGTCGTCAAAGAACTGTTT
GAATTTGAGTGTTTTTGTGCTTGAGCACTAGACTCAAGTGTTGTGATAAT
AATTTAAATATTTTTCACTTGAATTTGGAGGTTGAAGCCGTTTGCAACCC
CATCATCACTCCAGGGGGG
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