CX297742

Overview
NameCX297742
Unique NameCX297742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:258..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 8.195e-84
Identity = 150/184 (81.52%), Postives = 164/184 (89.13%), Query Frame = -2
Query:  178 PSFKFAWVFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 729
            P F F     K R F V A AA EK+++DFTVKDIDGKDV L+KFKGKV+LIVNVASRCGLT SNYSELSHLYEKYKTQGFEILAFPCNQFG QEPGSN EIK+FACTRFKAEFPIFDKVDVNGP+TAP+Y+FLKS+AGGFLG L+KWNFEKFL+DK GKV+ERYPPTTSPFQIEKDIQKL+ A
Sbjct:   58 PGFLF-----KSRPFTVQARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLLAA 236          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.308e-81
Identity = 147/183 (80.33%), Postives = 161/183 (87.98%), Query Frame = -2
Query:  178 SFKFAWVFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 726
            S  F  V  K RSF V+A A  +K++YDFTVKDID KDV LSKFKGKVLLIVNVASRCGLT SNY+ELSHLYE +K +G E+LAFPCNQFG QEPGSN EIK+FACT+FKAEFPIFDKVDVNGP TAPVYQFLKSS+GGF GD+VKWNFEKFLVDKNGKV+ERYPPTTSPFQIEKDIQKL+ A
Sbjct:   54 SSNFPIVPSKTRSFSVNAKAIKDKTIYDFTVKDIDKKDVSLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA 236          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.807e-81
Identity = 143/172 (83.14%), Postives = 156/172 (90.70%), Query Frame = -2
Query:  187 VKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 702
            VK ++F V+A AA EKS++DFTVKDIDG DV L KFKGK LLIVNVASRCGLT SNYSELS LYEKYK QGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKVDVNGP+TAP+Y+FLKS+AGGFLGD++KWNFEKFLVDK GKV+ERYPPTTSPFQIE    KL
Sbjct:   59 VKSKNFSVYARAAAEKSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIEVPNSKL 230          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.518e-66
Identity = 119/164 (72.56%), Postives = 137/164 (83.54%), Query Frame = -2
Query:  184 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 675
            A ++  KSLYDFTVKD  G DV LS +KGKVLLIVNVAS+CGLT SNY+EL+ LYEKYK  GFEILAFPCNQFG QEPG+N EI +FACTRFKAE+PIFDKVDVNG   APVY+FLKSS GG  GD +KWNF KFLVDK+G V++R+ PTTSP  IEKD++KL+
Sbjct:   65 AASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLL 228          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.242e-65
Identity = 117/160 (73.12%), Postives = 135/160 (84.38%), Query Frame = -2
Query:  184 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 663
            ++ S++DFTVKD  G+DV LS +KGK+LLIVNVAS+CGLT SNY+ELS LY+KYK QG EILAFPCNQFG QEPG N +I+EFACTRFKAEFPIFDKVDVNG N AP+Y+ LKSS GG  GD +KWNF KFLVDK G V+ERY PTTSP  IEKDI+KL+
Sbjct:    5 SKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 164          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.238e-64
Identity = 116/158 (73.42%), Postives = 133/158 (84.18%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            KS++DF VKD  G DV LS +KGKVLLIVNVAS+CGLT SNY EL+ LYE+YK +G EILAFPCNQFG QEPG N +I EFACTRFKAEFPIFDKVDVNG N APVY++LKSS GG  GD +KWNF KFLVD++GKV++RY PTTSP  IEKDI+KL+
Sbjct:   10 KSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLI 167          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.607e-63
Identity = 112/158 (70.89%), Postives = 133/158 (84.18%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  EI+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFLVDK G V++RY PTT+P  +EKDI+KL+
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.099e-63
Identity = 111/158 (70.25%), Postives = 135/158 (85.44%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            +S+YDFTVKD  GKDV LS +KGKVL+IVNVAS+CGLT SNY++++ LY+KYK QG EILAFPCNQFGGQEPG+  +I++  CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFL+DK G V++RY PTTSP  +EKDI+KL+
Sbjct:    9 QSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLL 166          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.741e-63
Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++++ +Y+KYK QG EILAFPCNQFGGQEPGS  EI+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFLVDK G V++RY PTT+P  +EKDI+KL+
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.741e-63
Identity = 113/163 (69.33%), Postives = 136/163 (83.44%), Query Frame = -2
Query:  184 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 672
            ++A  KS+++F V+D  G DV LS +KGKVLLIVNVAS+CGLT SNY+E++ LYEKY+  G EILAFPCNQFG QEPGSN E+ EFACTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GG  GD +KWNF KFLVDK+G V++RY PTTSP  IEKD++KL+
Sbjct:    5 SSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLL 167          
The following BLAST results are available for this feature:
BLAST of CX297742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX1_ARATH8.195e-8481.52Phospholipid hydroperoxide glutathione peroxidase ... [more]
GPX1_PEA1.308e-8180.33Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX7_ARATH3.807e-8183.14Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX6_ARATH4.518e-6672.56Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_CITSI2.242e-6573.13Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR3.238e-6473.42Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY1.607e-6370.89Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC2.099e-6370.25Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC2.741e-6370.25Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL2.741e-6369.33Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionC06004G05SK RindPdig24 Citrus clementina cDNA clone C06004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297742 ID=CX297742; Name=CX297742; organism=Citrus clementina; type=EST; length=739bp
GAGGTTTTTTAGTCAAATCTTTAAATATTAGGATATAAAAAACCTATAAC
ATTTCAGGGGAGGCAGGGAAAAATTCATCTATGTGATGCCCGATTCAGAA
ATATACATATACATATATTCAGTTTCTATCTCGTCGATACATCTGAGACA
TGGCCAAGCAGCTCAAGTCAAGATTCATGCCACAACAAGCTTCTGGATGT
CCTTCTCAATTTGGAAAGGCGAGGTAGTTGGTGGATATCTCTCGATGACT
TTACCATTTTTGTCCACTAAGAACTTCTCAAAGTTCCACTTGACAAGGTC
GCCTAAAAATCCCCCAGCACTTGACTTCAAAAACTGGTAAACTGGAGCTG
TGTTTGGTCCATTTACATCAACCTTGTCAAATATGGGAAATTCTGCCTTA
AACCTAGTACAAGCGAATTCCTTGATCTCAGGGTTTGATCCAGGCTCTTG
CCCACCAAATTGATTGCAAGGGAAAGCTAGAATCTCAAATCCTTGAGTCT
TGTACTTCTCATATAAGTGAGAGAGCTCCGAGTAATTAGATGGTGTCAAG
CCACATCTTGAAGCGACATTCACAATCAACAGAACTTTGCCCTTAAACTT
GCTAAGAGGAACATCTTTACCATCAATATCCTTGACGGTGAAGTCATATA
AAGACTTCTCAGTAGCAGCTGTAGCGTGAACACCAAAGGAACGACGTTTC
ACGAAAACCCAGGCAAATTTGAAAGATGGGAAACAGCCC
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