CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_PENFN (Histone H3 OS=Penicillium funiculosum GN=HHT1 PE=3 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 5.242e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_NEOFI (Histone H3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hht1 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 5.242e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_EMENI (Histone H3 OS=Emericella nidulans GN=hhtA PE=3 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 5.242e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_ASPTN (Histone H3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hht1 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 5.242e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_ASPOR (Histone H3 OS=Aspergillus oryzae GN=hhtA PE=3 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 5.242e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_ASPNC (Histone H3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hht1 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 5.242e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_ASPFU (Histone H3 OS=Aspergillus fumigatus GN=hhtA PE=3 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 5.242e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_ASPCL (Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 5.242e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_PHANO (Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.168e-67
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARK+APSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_COCIM (Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.992e-67
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQ+A+KAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQIAAKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 133
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H3_PENFN5.242e-68100.00Histone H3 OS=Penicillium funiculosum GN=HHT1 PE=3... [more]
H3_NEOFI5.242e-68100.00Histone H3 OS=Neosartorya fischeri (strain ATCC 10... [more]
H3_EMENI5.242e-68100.00Histone H3 OS=Emericella nidulans GN=hhtA PE=3 SV=... [more]
H3_ASPTN5.242e-68100.00Histone H3 OS=Aspergillus terreus (strain NIH 2624... [more]
H3_ASPOR5.242e-68100.00Histone H3 OS=Aspergillus oryzae GN=hhtA PE=3 SV=3[more]
H3_ASPNC5.242e-68100.00Histone H3 OS=Aspergillus niger (strain CBS 513.88... [more]
H3_ASPFU5.242e-68100.00Histone H3 OS=Aspergillus fumigatus GN=hhtA PE=3 S... [more]
H3_ASPCL5.242e-68100.00Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV... [more]
H3_PHANO1.168e-6799.25Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 S... [more]
H3_COCIM1.992e-6798.50Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
back to top