CX297754

Overview
NameCX297754
Unique NameCX297754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:913..1475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.279e-49
Identity = 91/96 (94.79%), Postives = 95/96 (98.96%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  261 GGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.477e-48
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GGFEVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  261 GGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.520e-48
Identity = 90/96 (93.75%), Postives = 94/96 (97.92%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  261 GGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 3.291e-48
Identity = 90/96 (93.75%), Postives = 94/96 (97.92%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIKKAI+KLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  261 GGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.331e-48
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTGKHET DINTF WGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  261 GGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.331e-48
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIKKAIEKLGLRH EHIAAYG+GNERRLTG+HETADINTF WGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  261 GGYEVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.251e-47
Identity = 88/96 (91.67%), Postives = 93/96 (96.88%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GGFEVIKKAIEKL LRH EHI+AYGEGNERRLTG+HETAD+NTF WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  262 GGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.633e-47
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 284
            GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  261 GGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.133e-47
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 287
            GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADIN F WGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  261 GGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.133e-47
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 287
            GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADIN F WGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  261 GGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
The following BLAST results are available for this feature:
BLAST of CX297754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA1_ALNGL2.279e-4994.79Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_VITVI1.477e-4895.83Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA2_VITVI2.520e-4893.75Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_LOTJA3.291e-4893.75Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA3_MEDSA7.331e-4890.63Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA2_PHAVU7.331e-4891.67Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA_PINSY1.251e-4791.67Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA_LACSA1.633e-4795.74Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA4_PEA2.133e-4793.68Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA3_PEA2.133e-4793.68Glutamine synthetase root isozyme A OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionC06004H05SK RindPdig24 Citrus clementina cDNA clone C06004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297754 ID=CX297754; Name=CX297754; organism=Citrus clementina; type=EST; length=563bp
AGGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGG
CACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCAC
TGGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTA
ACCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAG
GGTTACTTTGAGGACAGGAGACCTGCTTCTAACATGGATCCATATGTTGT
CACCTCCATGATTGCAGAAACCACTATTCTGTGGAAGCCATGAATGCTCC
TCTAGCAACCTTTGAAATATTTTGTTTGATCTGCTGGCTTTACTCAGGAT
TCACGAGTTCACGACAGAATTGTGTTCTGCTAAGGATGCTTTATTAGTAG
TAGTTCAGCTTTTGTCTTGTTTCAATCTCTGCCCCTGTATTTGCAACAGT
GGGTTCATTGCTTCCTGCTGTCCTATTGGGTTGAATAATGTAAACATTTA
ATTTAATAACATTATGGAAGGGTCAATTCCTTTTGTTCAAAAAAAAAAAA
AAAAAAAAAAAAA
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