CX297757

Overview
NameCX297757
Unique NameCX297757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11452 contig Ccv1_Contig11452:682..1359. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 70/80 (87.50%), Postives = 77/80 (96.25%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            LLFIVRDV+V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct:  207 LLFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            LLFIVRDV+VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++E  DMK+IHKL
Sbjct:  155 LLFIVRDVNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.060e-35
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            LLFIVRDV ++PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct:  211 LLFIVRDVGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.829e-35
Identity = 66/81 (81.48%), Postives = 76/81 (93.83%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 244
            LLFI+RDV+V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSPWFRLVV+NFLFKWWDH+EKGTL +  DMKTIHKLT
Sbjct:  229 LLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.829e-35
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            LLFIVRDV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct:  205 LLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.518e-33
Identity = 64/80 (80.00%), Postives = 74/80 (92.50%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            LLFI+RDV+++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+EKG+L +  DMKTIHKL
Sbjct:  208 LLFIIRDVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            LLFIVRDV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct:  154 LLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 233          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 38/80 (47.50%), Postives = 65/80 (81.25%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            +LF+ ++V++NP+P+E+  Y YV++E+LKEL++KA +GE  +KL+PWF+++VD FLFKWWD+L    L++ +D + IH++
Sbjct:  152 ILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNLNH--LSQFVDHEKIHRM 227          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 36/80 (45.00%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            +LF+ ++V++NP+P+E+  + YV++E+LKELL+KA  GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + IH++
Sbjct:  152 ILFVRKNVTLNPDPNEIKSFCYVSKEELKELLKKAANGE--IKITPWFQIIAETFLFKWWDNLNH--LNQFVDHEKIHRM 227          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 36/80 (45.00%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            +LF+ ++V++NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct:  152 ILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNLNH--LSPFVDHEKIHRL 227          
The following BLAST results are available for this feature:
BLAST of CX297757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IDI2_CLABR9.248e-3687.50Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_CAMAC9.248e-3686.25Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CLAXA2.060e-3586.25Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CAMAC7.829e-3581.48Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI2_ARATH7.829e-3586.25Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CLABR2.518e-3380.00Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_ARATH1.250e-3278.75Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_MESAU8.696e-1847.50Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_MACFA9.614e-1745.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_MOUSE1.256e-1645.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC06004H08SK RindPdig24 Citrus clementina cDNA clone C06004H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297757 ID=CX297757; Name=CX297757; organism=Citrus clementina; type=EST; length=678bp
CTTACTTTTCATTGTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAG
TAGCCGAGTATAAATATGTCAACCGGGAACAGTTAAAAGAGCTTTTGAGG
AAAGCAGATGCTGGAGAAGAAGGTTTGAAGCTGTCTCCTTGGTTCAGACT
GGTTGTGGACAATTTCTTGTTCAAGTGGTGGGATCACCTCGAAAAAGGTA
CCCTTAACGAAGTCATTGACATGAAGACCATTCACAAGTTGACTTAATAA
AGCCGCAGGCCCTTGAAACACAGTATTTGTGTGCCGGAACCTGTATTCCA
ATAAGTTTGGGCATTTGAGAGTTCTTCAAGACATTAAGGGTACACAGTAT
CTTCTCACCGGTTTCTTTATTCCAATAAATTTGGATATGCGAGAGTTCTA
CACAGATTAGCATTTTGTTGTTGACGTTACCTTATCTTTTCGTATGTGCT
GCTTTTATGGAATTTTATTGTTAAGTTTGTAATTTTGACATTACATATGG
TTTAGTAAAAAAATAAAAATCTGCTTCTTCTATTAAAAATGCAGTTGATT
TTAGTTTATTTTTCTGAAGTTGTACTAGATTTGAGCCTTGTGAAGCCTCA
TTTGCTGGTAAAGAAATGAAGAATTAGTGCTGTTTGGCTATTTGTTTTAT
GTCGGAAGTTCAGTAATCTGTTTTTCGT
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