CX297760

Overview
NameCX297760
Unique NameCX297760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297760_ssr493 microsatellite CX297760_ssr493:493..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 4.817e-104
Identity = 190/228 (83.33%), Postives = 199/228 (87.28%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQH 688
            IGFCTT TERLLVYPFMQNLS+A+RLREIK G+PVLDW TRKR+ALGAARG EYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVR+TNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSR                 REKRL AIVD+NL+  Y  +EVE MIQVALLCTQ SPEDRP MSEVVRMLEGEGLAERWEEWQ+
Sbjct:  351 IGFCTTQTERLLVYPFMQNLSLAHRLREIKAGDPVLDWETRKRIALGAARGFEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLGAIVDKNLDGEYIKEEVEMMIQVALLCTQGSPEDRPVMSEVVRMLEGEGLAERWEEWQN 578          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 6.989e-87
Identity = 156/226 (69.03%), Postives = 183/226 (80.97%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQ 685
            GFC TPTERLLVYP+M N SVA  LRE  P +P LDW TRKR+ALG+ARGL YLH+HC+PKIIHRDVKAAN+LLDE+FEAVVGDFGLAKL+D + T+VTT VRGT+GHIAPEYLSTGKSSE+TDVFGYGIMLLEL+TGQRA D +R                 +EK+L+ +VD +L  NY  +E+E +IQVALLCTQ SP +RP MSEVVRMLEG+GLAE+W+EWQ
Sbjct:  364 GFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDEWQ 589          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 2.656e-86
Identity = 156/226 (69.03%), Postives = 183/226 (80.97%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQ 685
            GFC TPTERLLVYP+M N SVA  LRE    +P LDW  R+R+ALG+ARGL YLH+HC+PKIIHRDVKAAN+LLDE+FEAVVGDFGLAKL+D + T+VTT VRGT+GHIAPEYLSTGKSSE+TDVFGYG+MLLEL+TGQRA D +R                 +EK+L+A+VD +L  NY  +EVE +IQVALLCTQ+SP +RP MSEVVRMLEG+GLAERWEEWQ
Sbjct:  351 GFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQ 576          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.748e-83
Identity = 151/226 (66.81%), Postives = 180/226 (79.65%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQ 685
            GFC TPTERLLVYP+M N SVA  LRE  P +  L W  R+++ALG+ARGL YLH+HC+PKIIHRDVKAAN+LLDE+FEAVVGDFGLA+L+D + T+VTT VRGT+GHIAPEYLSTGKSSE+TDVFGYGIMLLEL+TGQRA D +R                 +EK+L+ +VD +L  NY   EVE +IQVALLCTQ+SP +RP MSEVVRMLEG+GLAE+W+EWQ
Sbjct:  367 GFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLAWSIRQQIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAEKWDEWQ 592          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 1.970e-81
Identity = 149/226 (65.93%), Postives = 176/226 (77.88%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQ 685
            GFC TPTERLLVYP+M N SVA  LRE   G P LDW  RK +ALG+ARGL YLH+HC+ KIIHRDVKAAN+LLDE+FEAVVGDFGLAKL++   ++VTT VRGT+GHIAPEYLSTGKSSE+TDVFGYG+MLLEL+TGQ+A D +R                 +EK+L+++VD  L   Y   EVE +IQ+ALLCTQ+S  +RP MSEVVRMLEG+GLAERWEEWQ
Sbjct:  356 GFCMTPTERLLVYPYMANGSVASCLRERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAVVGDFGLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQ 581          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.277e-80
Identity = 148/226 (65.49%), Postives = 175/226 (77.43%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQ 685
            GFC TPTERLLVYP+M N SVA  LRE   G P LDW  RK +ALG+ARGL YLH+HC+ KIIH DVKAAN+LLDE+FEAVVGDFGLAKL++   ++VTT VRGT+GHIAPEYLSTGKSSE+TDVFGYG+MLLEL+TGQ+A D +R                 +EK+L+++VD  L   Y   EVE +IQ+ALLCTQ+S  +RP MSEVVRMLEG+GLAERWEEWQ
Sbjct:  337 GFCMTPTERLLVYPYMANGSVASCLRERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHLDVKAANILLDEEFEAVVGDFGLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQ 562          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.413e-71
Identity = 137/223 (61.43%), Postives = 170/223 (76.23%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERW 673
            IG+C + +ERLLVYP+M N SVA RL+     +P LDW TRK++A+GAARGL YLHE C+PKIIHRDVKAAN+LLDE FEAVVGDFGLAKL++   ++VTT VRGT+GHIAPEYLSTG+SSE+TDVFG+GI+LLEL+TG RA++F +                 +E +++ +VDR L   Y+  EV  M+QVALLCTQ  P  RP MSEVV+MLEG+GLAERW
Sbjct:  360 IGYCASSSERLLVYPYMSNGSVASRLK----AKPALDWNTRKKIAIGAARGLFYLHEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLNHEDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGK-SVSQKGAMLEWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQMLEGDGLAERW 577          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.188e-64
Identity = 125/215 (58.14%), Postives = 157/215 (73.02%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEG 652
            GFC TP ER+LVYP+M N SVA RLR+    +P LDW  R  +ALGAARGL YLHE CNPKIIHRDVKAAN+LLDE FEA+VGDFGLAKL+D R ++VTT VRGT+GHIAPEYLSTG+SSE+TDVFG+G+++LEL+TG + ID                     EKR   +VDR+L   ++   +E ++++ALLCTQ  P  RP MS+V+++LEG
Sbjct:  361 GFCMTPEERMLVYPYMPNGSVADRLRDNYGEKPSLDWNRRISIALGAARGLVYLHEQCNPKIIHRDVKAANILLDESFEAIVGDFGLAKLLDQRDSHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGVLILELITGHKMID-QGNGQVRKGMILSWVRTLKAEKRFAEMVDRDLKGEFDDLVLEEVVELALLCTQPHPNLRPRMSQVLKVLEG 574          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.194e-43
Identity = 88/216 (40.74%), Postives = 140/216 (64.81%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGE 655
            G+C +PT +LL+Y ++   S+   L E   GE  LDW +R  + +GAA+GL YLH  C+P+IIHRD+K++N+LLD + EA V DFGLAKL++  ++++TT V GT G++APEY+ +G+++E+TDV+ +G+++LE+++G+R  D S                   EKR   IVD N  +   ++ ++ ++ +A  C   SPE+RP M  VV++LE E
Sbjct:  367 GYCNSPTSKLLLYDYLPGGSLDEALHE--RGEQ-LDWDSRVNIIIGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDAS--FIEKGLNVVGWLKFLISEKRPRDIVDPNC-EGMQMESLDALLSIATQCVSPSPEERPTMHRVVQLLESE 576          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.089e-43
Identity = 91/220 (41.36%), Postives = 134/220 (60.91%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAE 667
            G C    + LLVY F++N S+A  L   +  +  LDW TR+++ +G ARGL YLHE    KI+HRD+KA NVLLD+     + DFGLAKL +   T+++T++ GT G++APEY   G  +++ DV+ +GI+ LE+V G R+    R                 +   L+ +VD  L   YN +E  TMIQ+A++CT + P +RP+MSEVV+MLEG+ + E
Sbjct:  685 GCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDSTHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIVHG-RSNKIERSKNNTFYLIDWVEVLREKNNLLE-LVDPRLGSEYNREEAMTMIQIAIMCTSSEPCERPSMSEVVKMLEGKKMVE 902          
The following BLAST results are available for this feature:
BLAST of CX297760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
Y5129_ARATH4.817e-10483.33Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH6.989e-8769.03Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
BAK1_ARATH2.656e-8669.03BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK2_ARATH2.748e-8366.81Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK4_ARATH1.970e-8165.93Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
SERK5_ARATH1.277e-8065.49Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
Y2239_ARATH2.413e-7161.43Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH2.188e-6458.14Probable LRR receptor-like serine/threonine-protei... [more]
FEI1_ARATH6.194e-4340.74LRR receptor-like serine/threonine-protein kinase ... [more]
Y1534_ARATH8.089e-4341.36Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC06004H11SK RindPdig24 Citrus clementina cDNA clone C06004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297760 ID=CX297760; Name=CX297760; organism=Citrus clementina; type=EST; length=688bp
GAGGATTGGATTTTGCACAACACCTACTGAACGTCTCTTGGTGTATCCAT
TTATGCAGAACTTGAGTGTAGCCTATCGCTTACGAGAAATTAAACCTGGA
GAGCCTGTTTTGGACTGGGTTACAAGAAAACGAGTGGCATTAGGTGCAGC
ACGTGGCCTGGAATATCTTCATGAGCATTGCAATCCTAAGATCATACATC
GGGATGTGAAGGCTGCAAATGTATTACTGGATGAAGATTTTGAAGCAGTT
GTTGGTGACTTTGGATTGGCAAAATTGGTGGACGTGAGAAAGACTAATGT
GACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAGTACTTGT
CCACTGGGAAATCATCAGAAAGGACAGATGTTTTTGGTTATGGGATTATG
CTTCTGGAGCTTGTAACAGGTCAAAGGGCAATTGACTTTTCACGTTTGGA
AGAAGAAGATGATGTCCTATTGCTTGACCATGTCAAGAAGCTAGAGAGAG
AGAAAAGGTTGGATGCTATTGTAGATCGCAACCTTAATAAGAATTACAAC
ATCCAAGAGGTGGAGACAATGATTCAAGTTGCACTGCTCTGCACACAAGC
ATCACCAGAGGACCGTCCAGCAATGTCAGAGGTGGTGCGGATGTTGGAAG
GAGAGGGTCTAGCTGAGAGGTGGGAAGAGTGGCAGCAT
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