CX297860

Overview
NameCX297860
Unique NameCX297860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297860 vs. ExPASy Swiss-Prot
Match: IRE1_CAEEL (Serine/threonine-protein kinase/endoribonuclease ire-1 OS=Caenorhabditis elegans GN=ire-1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 70/148 (47.30%), Postives = 101/148 (68.24%), Query Frame = 3
Query:   12 RPKAQNVLNHPFFWTADTRLSFLRDVSDRVELEDRESDSKLLRALEGIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKYVTND 455
            R  A  VLNHPFFWT++ RL++  DVSDRVE E  E +S ++R +E  A + + G W EK+     E++ ++R YK  +VRDLLR +RNK +H+RELP+D+++ LG  P+ F +YF+ RFP+LL+ VY     YC GE VF +Y ++D
Sbjct:  766 RLTADAVLNHPFFWTSEKRLAYFSDVSDRVEKE--EDNSPVVRRIETDARIVVCGGWREKICDALKEDLRKFRTYKSFSVRDLLRAMRNKKHHYRELPEDVRQSLGDIPDQFLHYFTSRFPRLLLHVYKAT-EYCSGEAVFKRYYSDD 910          
BLAST of CX297860 vs. ExPASy Swiss-Prot
Match: IRE1_YEAST (Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Saccharomyces cerevisiae GN=IRE1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 9.163e-31
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 3
Query:   12 RPKAQNVLNHPFFWTADTRLSFLRDVSDRVELEDRESDSKLLRALE-GIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKYV 446
            RP A  VL HP FW    +L FL  VSDR+E+E+R+  S LL   + G   V  +G W  K +  F++N+ RYR+Y    + DLLR +RNK +HF +LP+DI EL+G  P+GFY+YF+ RFP LLI VY ++      +++  +++
Sbjct:  968 RPTAMKVLRHPLFWPKSKKLEFLLKVSDRLEIENRDPPSALLMKFDAGSDFVIPSGDWTVKFDKTFMDNLERYRKYHSSKLMDLLRALRNKYHHFMDLPEDIAELMGPVPDGFYDYFTKRFPNLLIGVYMIVKENLSDDQILREFL 1113          
BLAST of CX297860 vs. ExPASy Swiss-Prot
Match: PPK4_SCHPO (Serine/threonine-protein kinase ppk4 OS=Schizosaccharomyces pombe GN=ppk4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.911e-28
Identity = 56/145 (38.62%), Postives = 91/145 (62.76%), Query Frame = 3
Query:   12 RPKAQNVLNHPFFWTADTRLSFLRDVSDRVELEDRESDSKLLRALEGIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKYV 446
            RP  + VLNHP FW    +L FL DVSDR E+E+R+  S LL+ LE  +   +   W   + +  ++N+G+YR+Y    + D+LRV+RNK +H+++LP+ ++ +LG  P+GF +YF  +FP LL+  Y+++      E  F +Y+
Sbjct:  926 RPTIEVVLNHPLFWDYAKKLDFLIDVSDRFEVEERDPPSPLLQMLENNSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRHHYQDLPESVRRVLGDLPDGFTSYFVEKFPMLLLHCYHLVKDVLYEESQFKRYL 1070          
BLAST of CX297860 vs. ExPASy Swiss-Prot
Match: ERN1_MOUSE (Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Mus musculus GN=Ern1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.617e-27
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 3
Query:   12 RPKAQNVLNHPFFWTADTRLSFLRDVSDRVELEDRESDSKLLRALEGIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKY 443
            RP A++VL HPFFW+ + +L F +DVSDR+E E    D  ++R LE      +   W E +      ++ ++R YK  +VRDLLR +RNK +H+RELP ++QE LGS P+ F  YF+ RFP LL   Y  +   C+ E +F  Y
Sbjct:  820 RPSAKHVLKHPFFWSLEKQLQFFQDVSDRIEKE--ALDGPIVRQLERGGRAVVKMDWRENITVPLQTDLRKFRTYKGGSVRDLLRAMRNKKHHYRELPVEVQETLGSIPDDFVRYFTSRFPHLLSHTYQAM-ELCRHERLFQTY 960          
BLAST of CX297860 vs. ExPASy Swiss-Prot
Match: ERN1_HUMAN (Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Homo sapiens GN=ERN1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 3
Query:   12 RPKAQNVLNHPFFWTADTRLSFLRDVSDRVELEDRESDSKLLRALEGIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKY 443
            RP A++VL HPFFW+ + +L F +DVSDR+E E    D  +++ LE      +   W E +      ++ ++R YK  +VRDLLR +RNK +H+RELP +++E LGS P+ F  YF+ RFP LL   Y  +   C  E +F  Y
Sbjct:  820 RPSAKHVLKHPFFWSLEKQLQFFQDVSDRIEKESL--DGPIVKQLERGGRAVVKMDWRENITVPLQTDLRKFRTYKGGSVRDLLRAMRNKKHHYRELPAEVRETLGSLPDDFVCYFTSRFPHLLAHTYRAM-ELCSHERLFQPY 960          
BLAST of CX297860 vs. ExPASy Swiss-Prot
Match: ERN2_HUMAN (Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Homo sapiens GN=ERN2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.050e-26
Identity = 59/148 (39.86%), Postives = 87/148 (58.78%), Query Frame = 3
Query:   12 RPKAQNVLNHPFFWTADTRLSFLRDVSDRVELEDRESDSKLLRALEGIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKYVTND 455
            RP A  VL HPFFW+   +L F +DVSD +E E  +    L+RALE      +   W E +      ++ ++R YK  +VRDLLR +RNK +H+RELP ++++ LG  P+GF  YF+ RFP+LL+  +  + + C  E +F  Y   D
Sbjct:  769 RPSAPQVLAHPFFWSRAKQLQFFQDVSDWLEKESEQEP--LVRALEAGGCAVVRDNWHEHISMPLQTDLRKFRSYKGTSVRDLLRAVRNKKHHYRELPVEVRQALGQVPDGFVQYFTNRFPRLLLHTHRAMRS-CASESLFLPYYPPD 913          
BLAST of CX297860 vs. ExPASy Swiss-Prot
Match: IREA_DICDI (Probable serine/threonine-protein kinase ireA OS=Dictyostelium discoideum GN=ireA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 61/144 (42.36%), Postives = 82/144 (56.94%), Query Frame = 3
Query:   12 RPKAQNVLNHPFFWTADTRLSFLRDVSDRVELEDRESDSKLLRALEGIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKY 443
            RP     +NHPFFW    +LSFL   SD +E E   S   L        +   +G W  K++   I+NIGRYR+Y   ++RDLLRVIRNK NH+R+L  + Q  LG  P+GF+NYF  +FP+L I  Y  I    K ++ F +Y
Sbjct:  839 RPDIGECINHPFFWEVHKKLSFLVAASDYLEFEKPTSPLNLEIDSHVDLVTDGSGDWWLKIDQVLIDNIGRYRKYNGKSIRDLLRVIRNKFNHYRDLSPEEQTCLGILPDGFFNYFDLKFPQLFIVTYLFILKNLKNDQYFVQY 982          
BLAST of CX297860 vs. ExPASy Swiss-Prot
Match: ERN2_MOUSE (Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Mus musculus GN=Ern2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.157e-23
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   12 RPKAQNVLNHPFFWTADTRLSFLRDVSDRVELEDRESDSKLLRALEGIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKY 443
            RP A  VL HP FW+    L F +DVSD +E E  +    L+ ALE  +   +   W + +      ++ R+R YK  +VRDLLR +RNK +H+RELP ++++ LG  P GF  YF+ RFP+LL+  +  + T C  E +F  Y
Sbjct:  756 RPSAGWVLAHPLFWSRAKELQFFQDVSDWLEKEPDQGP--LVSALEAGSYKVVREDWHKHISAPLQADLKRFRSYKGTSVRDLLRAMRNKKHHYRELPAEVRQTLGQLPAGFIQYFTQRFPRLLLHTHRAMRT-CASESLFLPY 896          
The following BLAST results are available for this feature:
BLAST of CX297860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
IRE1_CAEEL1.973e-3347.30Serine/threonine-protein kinase/endoribonuclease i... [more]
IRE1_YEAST9.163e-3143.15Serine/threonine-protein kinase/endoribonuclease I... [more]
PPK4_SCHPO1.911e-2838.62Serine/threonine-protein kinase ppk4 OS=Schizosacc... [more]
ERN1_MOUSE1.617e-2742.36Serine/threonine-protein kinase/endoribonuclease I... [more]
ERN1_HUMAN1.788e-2640.97Serine/threonine-protein kinase/endoribonuclease I... [more]
ERN2_HUMAN3.050e-2639.86Serine/threonine-protein kinase/endoribonuclease I... [more]
IREA_DICDI8.875e-2642.36Probable serine/threonine-protein kinase ireA OS=D... [more]
ERN2_MOUSE3.157e-2339.58Serine/threonine-protein kinase/endoribonuclease I... [more]
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Properties
Property NameValue
Genbank descriptionC06006A05SK RindPdig24 Citrus clementina cDNA clone C06006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297860 ID=CX297860; Name=CX297860; organism=Citrus clementina; type=EST; length=598bp
GAGGATTTTCTAGGCCGAAGGCACAGAATGTCTTGAATCATCCATTTTTC
TGGACTGCTGATACAAGACTCTCATTTCTTCGAGATGTTAGTGACCGAGT
TGAATTGGAAGACAGAGAGAGTGATTCAAAACTCTTGAGAGCATTAGAAG
GTATTGCACTAGTGGCTTTGAATGGGAAATGGGATGAAAAGATGGAAACT
AAATTCATTGAGAACATAGGGCGCTACAGGCGTTACAAATATGATAATGT
TCGTGACCTATTGCGAGTTATAAGAAACAAGTCAAATCATTTCAGGGAAC
TTCCTCAAGACATCCAAGAATTGTTAGGGTCACATCCTGAAGGGTTCTAC
AACTACTTTTCTTGCCGGTTCCCGAAACTTCTGATTGAGGTTTATAATGT
GATTTTTACGTACTGCAAAGGGGAGGAAGTCTTTCACAAATATGTAACAA
ATGATCAAATGTGAATACATCCATCTTCAGTCTGTTGTTCTGTACATAAA
TGCACGTTATGTATCACAATTTCTAATATTTCAAATGTACATTTGATCGA
CTAGGACCCGGACCTAGAGATTTTCAAATTAAAAAAAAAAAAAAAAAA
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