CX297861

Overview
NameCX297861
Unique NameCX297861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.031e-98
Identity = 169/227 (74.45%), Postives = 193/227 (85.02%), Query Frame = 1
Query:    4 VFVKGLAQNGTPQWRNDDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            +F  GL + G+P WR DDKDGHY+F +G+ LT RY+IL K+GEGTFGQVL+C D +  E VAIKV+RSI KYREAAM EIDVL+ L R+D  GSRCVQIRNWFDYRNHICIVFE LGPSLYDFLRKN+YR FP+DLVRE+GRQLLE VA+MHDLRLIHTDLKPENIL VS EY+KIPDYK  +R   D +Y+K LPKSSAIK+IDFGST +EHQ+HNYIVSTRHYRA
Sbjct:   81 MFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILSKMGEGTFGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAYMHDLRLIHTDLKPENILLVSSEYIKIPDYKFLSRPTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHNYIVSTRHYRA 307          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.293e-95
Identity = 167/225 (74.22%), Postives = 193/225 (85.78%), Query Frame = 1
Query:   10 VKGLAQNGTPQWRNDDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            VKG+A+NG+P WR DDKDGHY+F LG++LT RYKI  K+GEGTFGQVL+C DRE  E VA+K+VR +KKYREAAM EI++L+ L ++D+ G+RCVQIRNWFDYRNHICIVFE LG SLYDFLRKNNYR FP+DLVREIG QLLECVAFMHDLR+IHTDLKPENIL VS +Y+KIP+YK  +R   DV  YKR+PKSSAIKVIDFGST YE Q+  YIVSTRHYRA
Sbjct:   66 VKGVARNGSPPWREDDKDGHYIFELGDDLTPRYKIYSKMGEGTFGQVLECWDRERKEMVAVKIVRGVKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIGWQLLECVAFMHDLRMIHTDLKPENILLVSSDYVKIPEYK-GSRLQRDV-CYKRVPKSSAIKVIDFGSTTYERQDQTYIVSTRHYRA 288          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 5.879e-78
Identity = 141/228 (61.84%), Postives = 183/228 (80.26%), Query Frame = 1
Query:   10 VKGLAQNG---TPQWRNDDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            +KG   +G   +P  R+DD+DGHY+F+L +NLT RYKIL K+GEGTFG+VL+C DR+T E VAIK++RSIKKYR+AAM EIDVL+ L + D+  +RCVQ++NWFDYRNHICIVFE LGPSL+DFL++N Y  FP+ LVR+ G QLLE VA+MH+L+L+HTDLKPENIL VS E +K+PD K   RS  +  +++ LPKSSAIK+IDFGST  +++ H+ IV TRHYR+
Sbjct:   36 IKGHGSDGRILSPPLRDDDRDGHYVFSLRDNLTPRYKILSKMGEGTFGRVLECWDRDTKEYVAIKIIRSIKKYRDAAMIEIDVLQKLVKSDKGRTRCVQMKNWFDYRNHICIVFEKLGPSLFDFLKRNKYSAFPLALVRDFGCQLLESVAYMHELQLVHTDLKPENILLVSSENVKLPDNK---RSAANETHFRCLPKSSAIKLIDFGSTVCDNRIHHSIVQTRHYRS 260          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: DOA_DROME (Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.250e-53
Identity = 102/212 (48.11%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYD-RSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD DGH ++  G+ L  RYKI+  +GEGTFG+V+   D E    +A+K++++++KYREAA  EI+ LE + + D      CV++ +WFDY  H+CIVFEMLG S++DFLR+NNY P+P+D VR +  QL   V F+HD RL HTDLKPENILFV  +Y    ++K        +N   R  K++ +++IDFGS  ++H+ H+ IVSTRHYRA
Sbjct:  461 DDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDMERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFEMLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYTSHYNHK--------INREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRA 664          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK2_HUMAN (Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.116e-52
Identity = 101/213 (47.42%), Postives = 147/213 (69.01%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLD-RETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSR-CVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD +GH ++ +G+ L  RY+I+  +GEGTFG+V+ C+D R  G  VA+K++++++KY+EAA  EI+VLE +   D      CVQ+ +WFDY  H+CI FE+LG S +DFL+ NNY P+P+  VR +  QL + V F+HD +L HTDLKPENILFV+       DY++T     +    +R  KS+A++V+DFGS  ++H+ H+ IVSTRHYRA
Sbjct:  145 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVN------SDYELTYN--LEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRA 349          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK2_MOUSE (Dual specificity protein kinase CLK2 OS=Mus musculus GN=Clk2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.237e-52
Identity = 100/213 (46.95%), Postives = 146/213 (68.54%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGET-VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSR-CVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD +GH ++ +G+ L  RY+I+  +GEGT G+V+ C+D   G T VA+K++++++KY+EAA  EI+VLE +   D      CVQ+ +WFDY  H+CI FE+LG S +DFL+ NNY P+P+  VR +  QL + V F+HD +L HTDLKPENILFV+       DY++T     +    +R  KS+A++V+DFGS  ++H+ H+ IVSTRHYRA
Sbjct:  144 DDAEGHLIYHVGDWLQERYEIVSTLGEGTSGRVVQCVDHRRGGTRVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVN------SDYELTYN--LEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRA 348          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: LKH1_SCHPO (Dual specificity protein kinase lkh1 OS=Schizosaccharomyces pombe GN=lkh1 PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 8.001e-51
Identity = 98/212 (46.23%), Postives = 142/212 (66.98%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSG-SRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD DGHY         +RY ++R +G GTFG+V+ C D+ TG   AIKV R+I KYREA++ E+ VL+ +   D +  ++C+Q+R++FDYR HICIV ++ G S++DFL+ NNY PFP+  ++ + +QL + VAF+H L L+HTDLKPEN+L VS       +   T R P   NY +++  S  I++IDFGS  +E + H+ +VSTRHYRA
Sbjct:  344 DDDDGHYKVVPNSKFANRYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASLIELRVLQTIAHSDPTNENKCIQLRDYFDYRKHICIVTDLFGWSVFDFLKNNNYIPFPLKHIQMLSQQLFKSVAFLHSLGLVHTDLKPENVLLVS-------NASRTIRLPYR-NYSQKVLNSCEIRLIDFGSATFEDEYHSSVVSTRHYRA 547          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK4_HUMAN (Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.846e-50
Identity = 97/213 (45.54%), Postives = 146/213 (68.54%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRET-GETVAIKVVRSIKKYREAAMTEIDVLELLKRYD-RSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD++GH +   G+ L +RY+I+  +GEG FG+V++C+D    G  VA+K+V+++ +YREAA +EI VLE L   D  S  RCVQ+  WFD+  H+CIVFE+LG S YDF+++N++ PF +D +R++  Q+ + + F+H  +L HTDLKPENILFV  +Y+     K  ++   D    +R  K++ IKV+DFGS  Y+ + H+ +VSTRHYRA
Sbjct:  141 DDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYV----VKYNSKMKRD----ERTLKNTDIKVVDFGSATYDDEHHSTLVSTRHYRA 345          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK1_MOUSE (Dual specificity protein kinase CLK1 OS=Mus musculus GN=Clk1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.846e-50
Identity = 98/213 (46.01%), Postives = 145/213 (68.08%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETG-ETVAIKVVRSIKKYREAAMTEIDVLELLKRYD-RSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD++GH +   G+ L++RY+I+  +GEG FG+V++C+D + G   VA+K+V+++ +Y EAA +EI VLE L   D  S  RCVQ+  WF++R HICIVFE+LG S YDF+++N++ PF +D +R++  Q+ + V F+H  +L HTDLKPENILFV  +Y +  + K+     T VN          IKV+DFGS  Y+ + H+ +VSTRHYRA
Sbjct:  142 DDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKVGGRRVAVKIVKNVDRYCEAAQSEIQVLEHLNTTDPHSTFRCVQMLEWFEHRGHICIVFELLGLSTYDFIKENSFLPFRMDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVKSDYTEAYNPKMKRDERTIVN--------PDIKVVDFGSATYDDEHHSTLVSTRHYRA 346          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK4_MOUSE (Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.155e-49
Identity = 97/213 (45.54%), Postives = 146/213 (68.54%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRET-GETVAIKVVRSIKKYREAAMTEIDVLELLKRYD-RSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD++GH +   G+ L +RY+I+  +GEG FG+V++C+D    G  VA+K+V+++ +YREAA +EI VLE L   D  S  RCVQ+  WFD+  H+CIVFE+LG S YDF+++N++ PF +D +R++  Q+ + + F+H  +L HTDLKPENILFV  +Y+     K  ++   D    +R  K++ IKV+DFGS  Y+ + H+ +VSTRHYRA
Sbjct:  141 DDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYV----VKYNSKMKRD----ERTLKNTDIKVVDFGSATYDDEHHSTLVSTRHYRA 345          
The following BLAST results are available for this feature:
BLAST of CX297861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
AFC1_ARATH1.031e-9874.45Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
AFC2_ARATH5.293e-9574.22Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
AFC3_ARATH5.879e-7861.84Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
DOA_DROME2.250e-5348.11Serine/threonine-protein kinase Doa OS=Drosophila ... [more]
CLK2_HUMAN1.116e-5247.42Dual specificity protein kinase CLK2 OS=Homo sapie... [more]
CLK2_MOUSE7.237e-5246.95Dual specificity protein kinase CLK2 OS=Mus muscul... [more]
LKH1_SCHPO8.001e-5146.23Dual specificity protein kinase lkh1 OS=Schizosacc... [more]
CLK4_HUMAN8.846e-5045.54Dual specificity protein kinase CLK4 OS=Homo sapie... [more]
CLK1_MOUSE8.846e-5046.01Dual specificity protein kinase CLK1 OS=Mus muscul... [more]
CLK4_MOUSE1.155e-4945.54Dual specificity protein kinase CLK4 OS=Mus muscul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06006A06SK RindPdig24 Citrus clementina cDNA clone C06006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297861 ID=CX297861; Name=CX297861; organism=Citrus clementina; type=EST; length=684bp
GAGGTGTTTGTAAAGGGATTGGCTCAAAATGGCACTCCCCAATGGCGAAA
TGATGACAAAGATGGACATTACCTGTTTGCGCTTGGAGAGAATTTAACTT
CTCGCTATAAAATCCTCAGAAAAATTGGTGAAGGAACTTTTGGTCAGGTT
TTGGATTGTTTAGATAGGGAAACAGGAGAGACGGTTGCCATAAAAGTTGT
GCGAAGTATTAAGAAATACCGTGAAGCAGCAATGACAGAAATTGATGTGC
TTGAGTTGCTCAAAAGATATGACAGAAGTGGCAGTCGTTGTGTTCAAATA
AGGAACTGGTTTGACTATCGTAACCATATCTGTATCGTGTTTGAGATGCT
TGGACCTAGCCTATACGATTTTCTTCGGAAAAATAATTATCGCCCATTTC
CGGTTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCA
TTCATGCATGATTTGCGCCTCATCCATACCGACTTGAAGCCTGAGAATAT
ACTTTTTGTTTCTCCGGAATACTTGAAAATACCTGACTACAAGGTTACGG
CCCGATCACCAACTGATGTGAACTATTACAAGAGGTTGCCAAAGTCAAGT
GCTATTAAGGTTATTGATTTTGGAAGCACAGCATATGAGCATCAAGAACA
CAACTATATTGTCTCCACCAGGCACTACCGTGCT
back to top