CX297863

Overview
NameCX297863
Unique NameCX297863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.666e-34
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VENGNP IPNRIKECRSYPLY+ VREELGT+ LTGEKV SPGE+FDKVFTA+C GK+IDP+LECL+EW+GAPLPIC
Sbjct:  635 VENGNPAIPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGAPLPIC 710          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.788e-34
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VENGNP +PNRIKECRSYPLY+ VREELGT+ LTGEKV SPGE FDKVFTA+C GK++DP+LECL+EWNGAPLPIC
Sbjct:  607 VENGNPVVPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGAPLPIC 682          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.067e-33
Identity = 61/76 (80.26%), Postives = 72/76 (94.74%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E+GN  IPNRIKECRSYPLY++VRE++GT+ LTGEKV SPGE+FDKVFTAMC+GK+IDPMLECL+EWNGAPLPIC
Sbjct:  645 LESGNAAIPNRIKECRSYPLYKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGAPLPIC 720          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.393e-33
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VE+GNP+IPNRIKECRSYPLY+ VREELGT  LTGEKV SPGE FDKVFTAMC+GKIIDP+L+CL  WNGAPLPIC
Sbjct:  341 VESGNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGAPLPIC 416          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +NG   IPNRIKECRSYPLYR VREELGT  LTGEKVTSPGE+FDKVFTA+C+GKIIDPM+ECL EWNGAP+PIC
Sbjct:  651 DNGTSAIPNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGAPIPIC 725          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.029e-33
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +ENGN  IPNRIKECRSYPLY+ VREELGT  LTGEKV SPGE+FDKVFTA+C+G++IDP+++CL+EWNGAPLPIC
Sbjct:  639 IENGNSAIPNRIKECRSYPLYKFVREELGTELLTGEKVRSPGEEFDKVFTALCKGEMIDPLMDCLKEWNGAPLPIC 714          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.627e-32
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E GN  IPNRIKECRSYPLY+ VREEL T+ LTGEKV SPGE+FDKVF+A+CQGK+IDP+LECLREWNGAP+PIC
Sbjct:  545 LERGNSAIPNRIKECRSYPLYKFVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGAPIPIC 620          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.627e-32
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 3
Query:   27 NGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            NG   IPNRIKECRSYPLYR VREELGT  LTGEKV SPGE+FDKVFTAMC+GK+IDP+++CL+EWNGAP+PIC
Sbjct:  644 NGTAPIPNRIKECRSYPLYRFVREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGAPIPIC 717          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E+GNP IPNRIKECRSYPLY+ VREELGT +LTGEKV SPGE+F+KVFTAM +G+IIDP+LECL  WNGAPLPIC
Sbjct:  643 LESGNPAIPNRIKECRSYPLYKFVREELGTEYLTGEKVRSPGEEFEKVFTAMSKGEIIDPLLECLESWNGAPLPIC 718          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E+GNP IPNRI ECRSYPLYR VR+ELGT  LTGEKV SPGE+ DKVFTAMC G+IIDPMLECL+ WNGAPLPIC
Sbjct:  640 LESGNPAIPNRITECRSYPLYRFVRKELGTELLTGEKVRSPGEECDKVFTAMCNGQIIDPMLECLKSWNGAPLPIC 715          
The following BLAST results are available for this feature:
BLAST of CX297863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL2_POPKI3.666e-3482.89Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL1_POPKI4.788e-3481.58Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PALY_CITLI1.067e-3380.26Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PALY_VITVI1.393e-3382.89Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PAL1_ARATH1.819e-3382.67Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_CAMSI9.029e-3377.63Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PALY_PERAE2.627e-3278.95Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL2_ARATH2.627e-3279.73Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL3_PETCR4.481e-3278.95Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PAL1_TOBAC4.481e-3280.26Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]

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Properties
Property NameValue
Genbank descriptionC06006A08SK RindPdig24 Citrus clementina cDNA clone C06006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297863 ID=CX297863; Name=CX297863; organism=Citrus clementina; type=EST; length=419bp
GATTCGGCCGAGGGCAGACTGTTGAGAATGGAAATCCAACAATTCCCAAC
AGGATCAAAGAATGCAGGTCTTACCCATTGTACAGGTTAGTGAGGGAGGA
GCTCGGGACTAATTTTCTGACTGGGGAAAAAGTTACATCGCCCGGCGAGA
AATTTGACAAAGTGTTTACAGCAATGTGCCAGGGCAAGATCATTGATCCA
ATGCTGGAATGTCTCAGGGAATGGAATGGCGCCCCTCTTCCAATATGCTA
GTTGTTTTATTCTTAAGAATTCATTGAATTGCCGATGTGACTAAATGGTA
CAAATTAGTCCACCTGTAATGTTTCAATTCCTTGTATTTGTTGTTGAATA
TCAAGAAATCCGACTGGGTATCTCATTTTTTTTCCTCNNAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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