CX297873

Overview
NameCX297873
Unique NameCX297873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297873 vs. ExPASy Swiss-Prot
Match: DHSB2_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 DDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 113
            DDEFKLYRCHTILNCARACPKGLNPGKQI +IKQLQ
Sbjct:  242 DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 277
[Close]
BLAST of CX297873 vs. ExPASy Swiss-Prot
Match: DHSB1_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 DDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 113
            DDEFKLYRCHTILNCARACPKGLNPGKQI +IKQLQ
Sbjct:  243 DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278
The following BLAST results are available for this feature:
BLAST of CX297873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DHSB2_ARATH5.165e-1494.44Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB1_ARATH5.165e-1494.44Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
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Properties
Property NameValue
Genbank descriptionC06006B06SK RindPdig24 Citrus clementina cDNA clone C06006B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297873 ID=CX297873; Name=CX297873; organism=Citrus clementina; type=EST; length=557bp
GAGGAGATGATGAGTTTAAGCTGTATCGCTGCCATACCATATTGAACTGT
GCCCGTGCCTGCCCCAAGGGCTTGAACCCTGGAAAGCAGATAATAAATAT
CAAGCAACTTCAGCTAAAACGGTGATCATGCCTAAGAGTCAAGTTTTGTG
AATCAAGATGGTGTGGATTTGGCCAGTTAGTTACCTGCCAACTATATGGT
TTGAGTTAATAATTTGCACATTGCTTGTATTATTCATCCCATTTGTACTT
AGATTGGGATCAAATTTGAAGCTTCTTGTCTTTTTTATGCCTAATAATAA
TTTATAAAACTTATTGGATCCGTACTTTCTTCAATCAGGTGAAAAACAAA
TAAACATTACTGTTTTTGACCGAGTATACACAAATTACTGGTCGATGTGG
TAAGCCAATTAGCTATTTACTGTTTGGGGTAGTGTTTTGATGAGCTAGTT
GTGTAGTTACCATACTTTTCCATTCACCAGTTCCATTTGATGAGCTTTGT
ACCTCTTTTGGCCTTAAGTTTCTCCTCCAGACTGGAATGGGAATAAACAT
ATTGTTC
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