CX297875

Overview
NameCX297875
Unique NameCX297875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9581 contig Ccv1_Contig9581:315..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297875 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    5 DLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 130
            DLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   82 DLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123
[Close]
BLAST of CX297875 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    5 DLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 130
            DLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   82 DLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
[Close]
BLAST of CX297875 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    5 DLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 130
            DLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   82 DLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
[Close]
BLAST of CX297875 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    5 DLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 130
            DLRPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYAIKV
Sbjct:   82 DLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123
[Close]
BLAST of CX297875 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.880e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    5 DLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 130
            DLRPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYAIKV
Sbjct:   82 DLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123
The following BLAST results are available for this feature:
BLAST of CX297875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL354_ARATH2.639e-1695.2460S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL352_ARATH2.639e-1695.2460S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL351_ARATH2.639e-1695.2460S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL35_EUPES3.447e-1695.2460S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL353_ARATH5.880e-1692.8660S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC06006B08SK RindPdig24 Citrus clementina cDNA clone C06006B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297875 ID=CX297875; Name=CX297875; organism=Citrus clementina; type=EST; length=420bp
GAGGGATCTGCGTCCCAAGAAGACCCGGGCTATCAGGAGAAGGCTTACCA
AGCACCAGGCTTCACTGAAGACCGAGCGGGAGAAGAAGAGGGAGATGTAC
TTTCCCATGAGGAAGTACGCTATTAAGGTGTAGGCTAGAATCTTTTTCTA
GGAGTATCTTGGTATCTTGCAGTGACGAACCTATTTTGTTGACAAATTTT
TACTTTGTTACCTTTTCAAATATCATTTTTGTTCAATCTTATGTGTGTAA
AACTTGAAGGGTGCATCTCAACCTAAACAAGATGTGCTAGATTGTGATGG
AATAGCAGTCAAGATAGGATTTCTGTTCTTGAGTGTTCTTATTTATCGAC
ATTTGTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACCTCGGGGGGGGGCCCGGT
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