CX297877

Overview
NameCX297877
Unique NameCX297877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS3_ARATH (Ribose-phosphate pyrophosphokinase 3 OS=Arabidopsis thaliana GN=PRS3 PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.830e-106
Identity = 187/214 (87.38%), Postives = 200/214 (93.46%), Query Frame = 3
Query:    3 MEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 644
            MEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFES IPLL +RLQ LPDSDNISIAFPDDGAWKRFHKQLQH+P IVCNKVR G++RIVRIKEGD  GRH+VIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFP +SW+RF+ DT G P  GL+YFWI+DSC +TVKEVM+KPPFEVLSLAGSIASALQ+
Sbjct:  198 MEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESGIPLLKSRLQSLPDSDNISIAFPDDGAWKRFHKQLQHYPTIVCNKVRMGDKRIVRIKEGDAEGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPRSSWKRFKLDTKGDPAEGLSYFWITDSCGMTVKEVMNKPPFEVLSLAGSIASALQV 411          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS3_SPIOL (Ribose-phosphate pyrophosphokinase 3, mitochondrial OS=Spinacia oleracea GN=PRS3 PE=2 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 9.082e-106
Identity = 183/214 (85.51%), Postives = 199/214 (92.99%), Query Frame = 3
Query:    3 MEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 644
            MEDEGDVATAFTLARILSNIP SR GPTSLVTFDIHALQERFYFGD ILPCFES IPLL  +LQQLPDSDNI+IAFPDDGAWKRFHKQLQHFPMIVC KVR+G+QRIVR+KEGDP GRH+VIVDDLVQSGGTLIECQKVLAAHGAAK+SAYVTHGIFPN SWERF+ DT G PE G+T+FWI+DSCP+TVK V ++PPFEV+SLAGSIA+ALQI
Sbjct:  193 MEDEGDVATAFTLARILSNIPISREGPTSLVTFDIHALQERFYFGDNILPCFESGIPLLKKKLQQLPDSDNITIAFPDDGAWKRFHKQLQHFPMIVCAKVREGDQRIVRLKEGDPTGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGIFPNKSWERFKPDTAGCPEEGMTHFWITDSCPLTVKMVKNRPPFEVISLAGSIAAALQI 406          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS3_ORYSJ (Ribose-phosphate pyrophosphokinase 3 OS=Oryza sativa subsp. japonica GN=Os01g0723600 PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 2.735e-102
Identity = 176/214 (82.24%), Postives = 195/214 (91.12%), Query Frame = 3
Query:    3 MEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 644
            MEDEGDVATAFTLARILSNIP SRGGP+SLV FDIHALQERFYFGD++LPCFES IPLL +RLQ+LPDSDNI+IAFPDDGAWKRF+KQLQHFPM+VCNKVR+G QRIVRIKEGDPRGRH+VIVDDLVQSGGTLIECQKVLA HGAAK+SAYVTHGIFPN SWE+F+ D G  P  GL++FWI+DSCP+TV  V  + PFE+LSLAG IASALQI
Sbjct:  196 MEDEGDVATAFTLARILSNIPISRGGPSSLVIFDIHALQERFYFGDSVLPCFESGIPLLKSRLQELPDSDNITIAFPDDGAWKRFYKQLQHFPMVVCNKVREGEQRIVRIKEGDPRGRHVVIVDDLVQSGGTLIECQKVLAEHGAAKVSAYVTHGIFPNKSWEKFQPDNGEGPGHGLSHFWITDSCPLTVNAVKDRQPFEILSLAGPIASALQI 409          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS4_ORYSJ (Ribose-phosphate pyrophosphokinase 4 OS=Oryza sativa subsp. japonica GN=Os02g0714600 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 4.838e-91
Identity = 160/214 (74.77%), Postives = 182/214 (85.05%), Query Frame = 3
Query:    3 MEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 644
            +E+EGDVATAFTLARILS IP SRGGPTS+V +DIHALQERFYFGD +LPCFE+ IPLLL RL+QLPD+DNI+IAFPDDGAWKRFHK L +FPM+VC KVR+G++RIVRIKEG+P GRH+VIVDDLVQSGGTL ECQKVLAAHGAAK+SAYVTH +FP  S+ERF             YFWI+DSCP TVK +  +PPFEVLSLAGSIA ALQI
Sbjct:  112 VEEEGDVATAFTLARILSMIPKSRGGPTSVVIYDIHALQERFYFGDDVLPCFETGIPLLLQRLRQLPDADNITIAFPDDGAWKRFHKLLLNFPMVVCAKVREGDKRIVRIKEGNPEGRHVVIVDDLVQSGGTLRECQKVLAAHGAAKVSAYVTHAVFPKQSYERFTHTNSAGSADKFAYFWITDSCPQTVKAINQQPPFEVLSLAGSIADALQI 325          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS4_SPIOL (Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.192e-89
Identity = 158/214 (73.83%), Postives = 180/214 (84.11%), Query Frame = 3
Query:    3 MEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 644
            ME+EGDVATAFT+ARILSNIP SRGGPTS+V +DIHALQERFYF D +LP FE+ IPLL  RL QLPD+D I +AFPDDGAWKRFHKQL HFPM+VC KVR+G++RIVR+KEG+P G H+VIVDDLVQSGGTLIECQKVLAAHGA K+SAYVTH +FP  S+ERF     G  +   TYFWI+DSCP TVK + +K PFEVLSLAGSIA ALQI
Sbjct:  106 MEEEGDVATAFTMARILSNIPVSRGGPTSVVIYDIHALQERFYFSDNVLPLFETGIPLLKQRLDQLPDADKIVVAFPDDGAWKRFHKQLDHFPMVVCAKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGATKVSAYVTHAVFPKNSFERFTHKDDGS-DKAFTYFWITDSCPRTVKSIANKAPFEVLSLAGSIADALQI 318          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS4_ARATH (Ribose-phosphate pyrophosphokinase 4 OS=Arabidopsis thaliana GN=PRS4 PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.009e-88
Identity = 154/214 (71.96%), Postives = 180/214 (84.11%), Query Frame = 3
Query:    3 MEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 644
            ME+EGDVATAFT+ARI+SNIP SRGGPTS+V +DIHALQERFYF D +LP FE+ IPLL  RLQQLP+++ + +AFPDDGAWKRFHK L H+P +VC KVR+G++RIVR+KEG+P G H+VIVDDLVQSGGTLIECQKVLAAHGA K+SAYVTHG+FP +SWERF     G  E    YFWI+DSCP TVK + +K PFEVLSLAGSIA ALQI
Sbjct:  125 MEEEGDVATAFTMARIVSNIPISRGGPTSVVIYDIHALQERFYFADQVLPLFETGIPLLTKRLQQLPETEKVIVAFPDDGAWKRFHKLLDHYPTVVCTKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAVKVSAYVTHGVFPKSSWERFTHKKNGL-EEAFAYFWITDSCPQTVKAIGNKAPFEVLSLAGSIADALQI 337          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_UREPA (Ribose-phosphate pyrophosphokinase OS=Ureaplasma parvum GN=prs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 63/207 (30.43%), Postives = 106/207 (51.21%), Query Frame = 3
Query:   42 ARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQ--LQHFPMIVCNKVRDG-NQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPF---EVLSLAGSIASALQI 644
            AR+++ +  S G  TS++T+DIH+LQ + +F D      E+   L+ +      DS NI+I  PD G  KR  +        + + +K R G NQ  +    GD + R  VIVDD++ +GGT++   K++   GA  I+   THG+F N + + F+Q    +         I+  C   + + +   PF   E++S+A +IA  ++I
Sbjct:  112 ARLVAKMIESAGA-TSVLTWDIHSLQTQGFF-DIPFDSLEAVWVLMKHYFSAYKDSSNITIVSPDYGGVKRAREISIATGATLAIVDKRRSGKNQVEINNVLGDVKDRDCVIVDDMIDTGGTILGAAKIVREKGAKSITIIATHGLFNNNARQHFQQAIKDR--------IINKIC---IADTIENEPFDGLEIVSIAPAIAKCIEI 305          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_MARMS (Ribose-phosphate pyrophosphokinase OS=Marinomonas sp. (strain MWYL1) GN=prs PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 3
Query:   27 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKR---FHKQLQHFPMIVCNKVRD-GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            TA  +A ++S +  +R     ++T D+HA Q + +F   +   +  A PLLL+ LQ+    +NI++  PD G   R   F K L    + + +K R   N+  +    GD  G+  V+VDD+  +GGTL    K L  HGAAK+ AY TH +    + E  +        S L    ++D+ P+T +E ++ P    LS++  +A A++
Sbjct:  109 TAKVVADMISAVGINR-----VLTVDLHADQIQGFFDIPVDNVY--ATPLLLDDLQR-QGHENITVVSPDVGGVVRARAFAKLLDDADLAIIDKRRPRANEAQIMHLIGDVEGKTCVLVDDMCDTGGTLCAAAKALKEHGAAKVLAYCTHPVLSGKAIENIK-------NSVLDELVVTDTIPLT-QEALNCPQIRQLSMSDIMAEAVR 301          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_STRAW (Ribose-phosphate pyrophosphokinase OS=Streptomyces avermitilis GN=prs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 55/205 (26.83%), Postives = 101/205 (49.27%), Query Frame = 3
Query:   42 ARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHF--PMIVCNKVRD---GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            AR+++++  + G    ++T D+H  Q + +F   +   F  A+P+L + +    D   +++  PD G  +   +       P+ + +K RD    NQ  V    GD +GR  V+VDD++ +GGT+      L AHGA  +    THG+    + +R +        S ++ F  +D+ P   +  + K    VLS+A +IA+A++
Sbjct:  117 ARLIADLMKTAGADR-ILTVDLHTDQIQGFFDGPVDHLF--ALPILADYVGAKVDRSKLTVVSPDAGRVRVADRWCDRLDAPLAIVHKRRDKDVANQVTVHEVVGDVKGRVCVLVDDMIDTGGTICAAADALFAHGAEDVIVTATHGVLSGPAADRLK-------NSKVSEFVFTDTLPTPGELELDK--ITVLSIAPTIANAVR 309          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_PORGI (Ribose-phosphate pyrophosphokinase OS=Porphyromonas gingivalis GN=prs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 54/215 (25.12%), Postives = 106/215 (49.30%), Query Frame = 3
Query:    6 EDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHF--PMIVCNKVRDGNQRIVRIKE-GDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            +D  D       A++++++  S+ G T L+T D+HA Q + +F   +   + S +   +  +++    +N+ +A PD G  KR +   +H   PM++C+K R     I  ++  GD + + +++VDD+V + GT+ +   ++  +GA  + A  +H +  + +  R +Q T       L     +DS P   K    K    +LS+A   A A++
Sbjct:   99 QDRKDKPRVSIGAKLIADL-LSKAGITRLITMDLHADQIQGFFDVPVDHLYGSTV--FMEYIRKNMPLENLVVATPDVGGTKRANSYAKHLGVPMVICHKSRLKANEIAEMRIIGDVQDKDVLLVDDIVDTAGTITKAADLMKENGARSVCAIASHAVMSDPASMRVDQST-------LKEMIFTDSIPYPHKCEKVK----ILSVADLFAEAIK 299          
The following BLAST results are available for this feature:
BLAST of CX297877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
KPRS3_ARATH1.830e-10687.38Ribose-phosphate pyrophosphokinase 3 OS=Arabidopsi... [more]
KPRS3_SPIOL9.082e-10685.51Ribose-phosphate pyrophosphokinase 3, mitochondria... [more]
KPRS3_ORYSJ2.735e-10282.24Ribose-phosphate pyrophosphokinase 3 OS=Oryza sati... [more]
KPRS4_ORYSJ4.838e-9174.77Ribose-phosphate pyrophosphokinase 4 OS=Oryza sati... [more]
KPRS4_SPIOL1.192e-8973.83Ribose-phosphate pyrophosphokinase 4 OS=Spinacia o... [more]
KPRS4_ARATH1.009e-8871.96Ribose-phosphate pyrophosphokinase 4 OS=Arabidopsi... [more]
KPRS_UREPA1.487e-1530.43Ribose-phosphate pyrophosphokinase OS=Ureaplasma p... [more]
KPRS_MARMS6.249e-1430.62Ribose-phosphate pyrophosphokinase OS=Marinomonas ... [more]
KPRS_STRAW2.626e-1226.83Ribose-phosphate pyrophosphokinase OS=Streptomyces... [more]
KPRS_PORGI2.626e-1225.12Ribose-phosphate pyrophosphokinase OS=Porphyromona... [more]

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Properties
Property NameValue
Genbank descriptionC06006B10SK RindPdig24 Citrus clementina cDNA clone C06006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297877 ID=CX297877; Name=CX297877; organism=Citrus clementina; type=EST; length=701bp
GCATGGAGGATGAGGGAGATGTTGCAACAGCTTTCACTCTTGCTAGGATC
TTGTCAAATATACCAACTTCTAGGGGGGGACCAACTAGCTTAGTGACATT
TGATATACATGCATTGCAGGAGAGGTTCTACTTTGGTGATACTATTTTAC
CATGCTTTGAAAGTGCAATACCTTTGCTGTTAAATAGGCTCCAACAGCTC
CCTGATTCTGACAATATTTCCATTGCTTTTCCTGATGATGGTGCATGGAA
ACGATTTCATAAGCAGCTGCAGCACTTTCCAATGATTGTTTGTAATAAAG
TTCGGGATGGTAACCAAAGGATTGTACGCATTAAGGAGGGAGACCCTCGA
GGACGCCACATTGTGATTGTTGATGATCTGGTTCAATCAGGTGGCACTCT
AATTGAATGTCAGAAAGTGCTAGCAGCCCATGGAGCAGCAAAAATAAGCG
CTTATGTGACGCATGGGATTTTTCCTAACGCGTCGTGGGAACGATTTGAA
CAAGATACTGGAGGAAAACCTGAGTCTGGCTTGACCTACTTCTGGATTAG
TGACTCCTGCCCAGTGACTGTAAAAGAGGTTATGAGCAAACCACCATTTG
AAGTTCTCAGTCTTGCGGGTTCCATTGCATCTGCTCTACAGATATAAATT
TGTTTTGAAATATCTAGTCATATCATATATAGAGAAAGTCCAAGCTGATT
T
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