CX297880

Overview
NameCX297880
Unique NameCX297880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length309
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7339 contig Ccv1_Contig7339:595..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: YJEFN_DROVI (YjeF N-terminal domain-containing protein GJ19543 OS=Drosophila virilis GN=GJ19543 PE=4 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.984e-23
Identity = 53/102 (51.96%), Postives = 65/102 (63.73%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF    R  F  +++ L          Q +  I SVDIPSGW VE+G + D  ++P +L+SLTAPKLCAK F G HHFLGGRFVPP +  KY+L LP YP
Sbjct:  129 GFSFKPPVRADFVSVVELL---------QQTKLPIASVDIPSGWDVEQGKLNDCDLEPTLLISLTAPKLCAKHFKGKHHFLGGRFVPPALQRKYELNLPAYP 221          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: YJEFN_DROGR (YjeF N-terminal domain-containing protein GH12525 OS=Drosophila grimshawi GN=GH12525 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.450e-22
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF    R  F  +++ L          Q +  I SVDIPSGW VE G + D  ++P +L+SLTAPKLCAK F G HHFLGGRFVPP +  KY+L LP YP
Sbjct:  129 GFSFKPPVRVDFVPVVELL---------QQTKLPIASVDIPSGWDVENGKLNDCDLEPTLLISLTAPKLCAKHFKGKHHFLGGRFVPPALQRKYELNLPEYP 221          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: AIBP_HUMAN (Apolipoprotein A-I-binding protein OS=Homo sapiens GN=APOA1BP PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.230e-22
Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF G  R PF  ++  L  L            I S+DIPSGW VE+G+ G  GI+PD+L+SLTAPK  A +F+G +H+LGGRFVPP +  KY+L LPPYP
Sbjct:  189 GFSFKGDVREPFHSILSVLKGL---------TVPIASIDIPSGWDVEKGNAG--GIQPDLLISLTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYP 279          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: YJEFN_DROMO (YjeF N-terminal domain-containing protein GI11178 OS=Drosophila mojavensis GN=GI11178 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.510e-22
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF    R  F  +++ L          Q +  I SVDIPSGW VE G + +  ++P +L+SLTAPKLCAK F G HHFLGGRFVPP +  KY+L LP YP
Sbjct:  129 GFSFKPPVRADFVPVVELL---------QQTKLPIASVDIPSGWDVEAGKLNECDMEPTLLISLTAPKLCAKHFKGKHHFLGGRFVPPALQRKYELNLPTYP 221          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: YJEFN_DROAN (YjeF N-terminal domain-containing protein GF19489 OS=Drosophila ananassae GN=GF19489 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.399e-22
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF    R  F  +++ +          Q    I SVDIPSGW VE+G + D  ++PD+L+SLTAPK+CA+ F G +H+LGGRFVPP +  KY L LP YP
Sbjct:  129 GFSFKPPVRAEFVAIVELM---------QQTTLPIASVDIPSGWDVEKGKVNDSDLEPDLLISLTAPKICARNFKGRYHYLGGRFVPPALQRKYDLNLPTYP 221          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: AIBP_PIG (Apolipoprotein A-I-binding protein OS=Sus scrofa GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.399e-22
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF G  R PF  ++  L  L            I S+DIPSGW VE G+ G  GI+PD+L+SLTAPK  A +F+G +H+LGGRFVPP +  KY+L LPPYP
Sbjct:  189 GFSFKGEVREPFRSILSVLNGL---------TVPIASIDIPSGWDVERGNSG--GIQPDLLISLTAPKKSAAQFTGRYHYLGGRFVPPALEKKYQLNLPPYP 279          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: AIBP_DANRE (Apolipoprotein A-I-binding protein OS=Danio rerio GN=apoa1bp PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.228e-21
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPV-IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF G  R PF +++ +L          +K  V I SVDIPSGW VE+G    +GI+PDML+SLTAPK  A  F G  HFLGGRFVPPV+  KY+L LP YP
Sbjct:  184 GFSFKGAVREPFGEILSQL----------KKITVPIASVDIPSGWDVEKGC--PDGIQPDMLISLTAPKKSAALFKGRFHFLGGRFVPPVLEQKYQLNLPQYP 274          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: AIBP_BOVIN (Apolipoprotein A-I-binding protein OS=Bos taurus GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.228e-21
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF G  R PF  ++  L  L            I S+DIPSGW VE+G  G  GI+PD+L+SLTAPK  A +F+G +H+LGGRFVPP +  KY+L LPPYP
Sbjct:  189 GFSFTGEVREPFRSILSVLNGL---------TVPIASIDIPSGWDVEKGSSG--GIQPDLLISLTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYP 279          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: YJEFN_DROSE (YjeF N-terminal domain-containing protein GM11335 OS=Drosophila sechellia GN=GM11335 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.665e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF    R  F  +++ +          Q +  I SVDIPSGW VE+G + +  ++P +L+SLTAPKLCA++F G HH+LGGRFVPP +  KY+L LP YP
Sbjct:  130 GFSFKPPVRADFVAVVELM---------QQTKLPIASVDIPSGWDVEKGKLTECDVEPALLISLTAPKLCARQFRGEHHYLGGRFVPPALQRKYELNLPVYP 222          
BLAST of CX297880 vs. ExPASy Swiss-Prot
Match: YJEFN_DROME (YjeF N-terminal domain-containing protein CG2974 OS=Drosophila melanogaster GN=CG2974 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.665e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 3
Query:    3 GFSFHGTPRPPFDDLIKRLLCLHGYDQTHQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYP 308
            GFSF    R  F  +++ +          Q +  I SVDIPSGW VE+G + +  ++P +L+SLTAPKLCA++F G HH+LGGRFVPP +  KY+L LP YP
Sbjct:  130 GFSFKPPVRADFVAVVELM---------QQTKLPIASVDIPSGWDVEKGKLTECDVEPALLISLTAPKLCARQFRGEHHYLGGRFVPPALQRKYELNLPVYP 222          
The following BLAST results are available for this feature:
BLAST of CX297880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
YJEFN_DROVI4.984e-2351.96YjeF N-terminal domain-containing protein GJ19543 ... [more]
YJEFN_DROGR1.450e-2251.96YjeF N-terminal domain-containing protein GH12525 ... [more]
AIBP_HUMAN3.230e-2251.96Apolipoprotein A-I-binding protein OS=Homo sapiens... [more]
YJEFN_DROMO5.510e-2250.98YjeF N-terminal domain-containing protein GI11178 ... [more]
YJEFN_DROAN9.399e-2248.04YjeF N-terminal domain-containing protein GF19489 ... [more]
AIBP_PIG9.399e-2251.96Apolipoprotein A-I-binding protein OS=Sus scrofa G... [more]
AIBP_DANRE1.228e-2154.37Apolipoprotein A-I-binding protein OS=Danio rerio ... [more]
AIBP_BOVIN1.228e-2151.96Apolipoprotein A-I-binding protein OS=Bos taurus G... [more]
YJEFN_DROSE4.665e-2148.04YjeF N-terminal domain-containing protein GM11335 ... [more]
YJEFN_DROME4.665e-2148.04YjeF N-terminal domain-containing protein CG2974 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06006C01SK RindPdig24 Citrus clementina cDNA clone C06006C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297880 ID=CX297880; Name=CX297880; organism=Citrus clementina; type=EST; length=309bp
TTGGGTTCTCCTTTCATGGAACCCCAAGGCCACCGTTTGATGATCTGATT
AAGAGACTGCTTTGTCTACATGGTTATGATCAAACACACCAAAAACGCCC
AGTTATTGTCTCTGTAGATATTCCATCTGGTTGGCACGTTGAAGAAGGGG
ATATTGGGGATGAAGGCATAAAACCAGACATGCTGGTTTCTTTAACTGCT
CCCAAACTGTGTGCAAAGAAATTCAGTGGTCCTCACCACTTTCTAGGTGG
TCGATTTGTCCCACCGGTCATTGCAGATAAATATAAGCTTCGTCTTCCAC
CTTATCCTG
back to top