CX297888

Overview
NameCX297888
Unique NameCX297888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297888 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.459e-54
Identity = 107/168 (63.69%), Postives = 122/168 (72.62%), Query Frame = 1
Query:    4 SAEGTPQRLSVPQRLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRNKGQFTSAKSNNEDSASAVSSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQV-IRAAGNINGS 504
            S  GTPQR S+PQRLASL                 YTVRKEVALRMQRNKGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANKG  RDLSKA+PQ  Q   LNKNE+       Q+ I  A +I+ S
Sbjct:  134 SLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQIMITVANDISNS 301          
BLAST of CX297888 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.187e-53
Identity = 106/165 (64.24%), Postives = 122/165 (73.94%), Query Frame = 1
Query:   13 GTPQRLSVPQRLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRNKGQFTSAKSNNEDSASAVSSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKA-APQAGQTSSLNKNEENGTLKAEQVIRAAGNINGS 504
            GTPQRLSVPQRLASL                 YTVRKEVALRMQR KGQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRTLCNACGLMWANKGTLRDLSK   PQ  Q  SLNKNE+   L+A+Q++   G+I+ +
Sbjct:  133 GTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDISNT 296          
BLAST of CX297888 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 77/158 (48.73%), Postives = 93/158 (58.86%), Query Frame = 1
Query:   25 RLSVPQRLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRNKGQFTSAKSNNEDSASAVSSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAAGNIN 498
            R S+PQR  SL                 Y VR+EVALRM RNKGQFTS+K  +     A +S G++Q  A D     + +I C HCGIS K TPMMRRGP GPRTLCNACGL WAN+GTLRDLSK   +     +L K ++ G+     V  AA N+N
Sbjct:  140 RCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD----GAYNS-GTDQDSAQD---DAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEE--NQLALMKPDDGGS-----VADAANNLN 282          
The following BLAST results are available for this feature:
BLAST of CX297888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT25_ARATH6.459e-5463.69GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH4.187e-5364.24GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT26_ARATH2.092e-2848.73GATA transcription factor 26 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC06006C10SK RindPdig24 Citrus clementina cDNA clone C06006C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297888 ID=CX297888; Name=CX297888; organism=Citrus clementina; type=EST; length=722bp
GATTCGGCCGAGGGTACTCCGCAACGGTTGAGTGTCCCACAGAGATTGGC
TTCACTGATTAGATTTCGTGAAAAGCGAAAAGAACGCAATTTTGAGAAGA
AAATTCGTTATACCGTCCGTAAAGAAGTAGCACTTCGGATGCAGCGAAAC
AAAGGTCAGTTTACTTCTGCGAAGTCCAATAATGAGGATTCTGCATCAGC
AGTTTCGAGTTGGGGGTCAAACCAGAGCTGGGCTGGGGATGTTAATGGAT
CCCAAAATCAAGACATTGTTTGCCGGCACTGCGGTATCAGTGAGAAGTCA
ACACCAATGATGCGACGTGGACCTGAAGGACCAAGGACCCTTTGCAATGC
CTGCGGACTTATGTGGGCAAACAAGGGAACTTTGAGGGATCTCTCCAAGG
CAGCACCCCAAGCTGGACAGACTTCTTCCTTAAACAAGAATGAGGAGAAT
GGAACTTTAAAAGCTGAGCAAGTCATTAGAGCTGCGGGAAATATTAACGG
CTCCACATGATAAGCCATTTGTGGCTGGGGCTCCATGTCAAACTTGAGTG
AGGTGAGGAGCAATAGTGTTGGTTGCACAGCAGGGCAAGTCAGTTTTATA
TGCTAACATGGGTATCAGCAGCTTATCCGTTAATGGCCAACCAGGTATCT
TGATGGATGGACATCGCGGAAAGTTGCATCATTCCGCAGGTTCCAATAAT
CCATCGCTGCTTGTACTTGGTT
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