CX297899

Overview
NameCX297899
Unique NameCX297899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11517 contig Ccv1_Contig11517:347..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 3.411e-107
Identity = 183/222 (82.43%), Postives = 204/222 (91.89%), Query Frame = 2
Query:    5 YGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            YGK Y+SVEEMKLRF+ F +NLDLIRSTN KGLSY+L LN+FAD +W+EFQR++LGAAQNCSAT KG+HK+T   +P+TKDWRE GIVSPVK+QGHCGSCWTFSTTG+LEAAYHQAFGKGISLSEQQLVDCA  FNN GC+GGLPSQAFEYIKYNGGLDTEEAYPYTGKDG CKFS++N+GVQV DSVNITLGAEDEL+HAVGLVRPVSVAFEVV  FRFY+
Sbjct:   66 YGKKYQSVEEMKLRFSVFKENLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRYKLGAAQNCSATLKGSHKITEATVPDTKDWREDGIVSPVKEQGHCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGTFNNFGCHGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGGCKFSAKNIGVQVRDSVNITLGAEDELKHAVGLVRPVSVAFEVVHEFRFYK 287          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 1.097e-105
Identity = 182/222 (81.98%), Postives = 202/222 (90.99%), Query Frame = 2
Query:    5 YGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            YGK Y++VEEMKLRF+ F +NLDLIRSTN KGLSY+LG+N+FAD +W+EFQR +LGAAQNCSAT KG+HK+T   LPETKDWRE GIVSPVKDQG CGSCWTFSTTG+LEAAYHQAFGKGISLSEQQLVDCA AFNN GCNGGLPSQAFEYIK NGGLDTE+AYPYTGKD  CKFS+ENVGVQVL+SVNITLGAEDEL+HAVGLVRPVS+AFEV+  FR Y+
Sbjct:   66 YGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHKVTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGAFNNYGCNGGLPSQAFEYIKSNGGLDTEKAYPYTGKDETCKFSAENVGVQVLNSVNITLGAEDELKHAVGLVRPVSIAFEVIHSFRLYK 287          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 1.876e-97
Identity = 173/224 (77.23%), Postives = 192/224 (85.71%), Query Frame = 2
Query:    5 YGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV--LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            YGK YES  E+  RF  FS++L L+RSTN KGLSYRLG+N+FAD SWEEF+  RLGAAQNCSAT  GNH++ A    LPETKDWRE GIVSPVK+QGHCGSCWTFSTTG+LEAAY QA GK ISLSEQQLVDC  AFNN GCNGGLPSQAFEYIKYNGGLDTEE+YPY G +G+CKF +ENVGV+VLDSVNITLGAEDEL+ AVGLVRPVSVAFEV+ GFR Y+
Sbjct:   66 YGKSYESAAEVHKRFRIFSESLQLVRSTNRKGLSYRLGINRFADMSWEEFRATRLGAAQNCSATLTGNHRMRAAAVALPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALEAAYTQATGKPISLSEQQLVDCGFAFNNFGCNGGLPSQAFEYIKYNGGLDTEESYPYQGVNGICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVRPVSVAFEVITGFRLYK 289          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 350.903 bits (899), Expect = 3.538e-96
Identity = 168/223 (75.34%), Postives = 193/223 (86.55%), Query Frame = 2
Query:    5 YGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLT-ADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            +GK Y    E++ RF  FS++L+L+RSTN +GL YRLG+N+FAD SWEEFQ  RLGAAQNCSAT  GNH++  A  LPETKDWRE GIVSPVKDQGHCGSCWTFSTTGSLEAAY QA GK +SLSEQQLVDCA A+NN GC+GGLPSQAFEYIKYNGGLDTEEAYPYTG +G+C +  ENVGV+VLDSVNITLGAEDEL++AVGLVRPVSVAF+V++GFR Y+
Sbjct:   69 HGKRYGDAAEVQRRFRIFSESLELVRSTNRRGLPYRLGINRFADMSWEEFQASRLGAAQNCSATLAGNHRMRDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATAYNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTGVNGICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVRPVSVAFQVINGFRMYK 291          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 3.538e-96
Identity = 169/220 (76.82%), Postives = 193/220 (87.73%), Query Frame = 2
Query:   11 KIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            K Y+SVEE+K RF  F  NL +IRS N KGLSY+LG+N+F D +W+EF++H+LGA+QNCSATTKGN KLT  VLPETKDWR+ GIVSPVK QG CGSCWTFSTTG+LEAAY QAFGKGISLSEQQLVDCA AFNN GCNGGLPSQAFEYIK+NGGLDTEEAYPYTGK+G+CKFS  N+GV+V+ SVNITLGAE EL++AV LVRPVSVAFEVV GF+ Y+
Sbjct:   66 KRYDSVEEIKQRFEIFLDNLKMIRSHNRKGLSYKLGINEFTDLTWDEFRKHKLGASQNCSATTKGNLKLTNVVLPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGAFNNFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTGKNGICKFSQANIGVKVISSVNITLGAEYELKYAVALVRPVSVAFEVVKGFKQYK 285          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 3.661e-93
Identity = 165/223 (73.99%), Postives = 187/223 (83.86%), Query Frame = 2
Query:    5 YGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLT-ADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            YGK YES  E++ RF  FS++L+ +RSTN KGL YRLG+N+F+D SWEEFQ  RLGAAQ CSAT  GNH +  A  LPETKDWRE GIVSPVK+Q HCGSCWTFSTTG+LEAAY QA GK ISLSEQQLVDCA  FNN GCNGGLPSQAFEYIKYNGG+DTEE+YPY G +GVC + +EN  VQVLDSVNITL AEDEL++AVGLVRPVSVAF+V+DGFR Y+
Sbjct:   68 YGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATLAGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDCAGGFNNFGCNGGLPSQAFEYIKYNGGIDTEESYPYKGVNGVCHYKAENAAVQVLDSVNITLNAEDELKNAVGLVRPVSVAFQVIDGFRQYK 290          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.565e-54
Identity = 113/218 (51.83%), Postives = 141/218 (64.68%), Query Frame = 2
Query:   23 SVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            S+EE   R   F  N   I + N    +++LGLN+F+D S++E +   L +  QNCSAT KGN+       P + DWR+ G  VSPVK+QG CGSCWTFSTTG+LE+A   A GK +SL+EQQLVDCAQ FNN GC GGLPSQAFEYI+YN G+  E+ YPY G+D  CKF  +     V D  NIT+  E+ +  AV L  PVS AFEV + F  YR
Sbjct:   47 SLEEYHHRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSAT-KGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYR 263          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.171e-53
Identity = 113/222 (50.90%), Postives = 145/222 (65.32%), Query Frame = 2
Query:   11 KIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            K Y S  E   R   F+ N   I++ N +  ++++GLN+F+D S+ E +   L +  QNCSAT K N+       P + DWR+ G +VSPVK+QG CGSCWTFSTTG+LE+A   A GK ++L+EQQLVDCAQ FNN GC GGLPSQAFEYI YN G+  E++YPY GK+G CKF+ E     V + VNITL  E  +  AV L  PVS AFEV + F  Y+
Sbjct:   42 KTYSS-REYSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWSEPQNCSAT-KSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYK 261          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.704e-53
Identity = 112/218 (51.38%), Postives = 140/218 (64.22%), Query Frame = 2
Query:   23 SVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            S EE   R   F+ NL  I + N +  ++++GLN+F+D S++E +R  L +  QNCSAT K N+       P + DWR+ G  V+PVK+QG CGSCWTFSTTG+LE+A   A GK   L+EQQLVDCAQ FNN GC GGLPSQAFEYI+YN G+  E+ YPY G+DG CK+        V D  NITL  E+ +  AV L  PVS AFEV   F  YR
Sbjct:   47 SSEEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQNCSAT-KSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGDCKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYR 263          
BLAST of CX297899 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.407e-52
Identity = 112/222 (50.45%), Postives = 144/222 (64.86%), Query Frame = 2
Query:   11 KIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYR 670
            K Y SVE    R   F+ N   I++ N +  ++++ LN+F+D S+ E +   L +  QNCSAT K N+       P + DWR+ G +VSPVK+QG C SCWTFSTTG+LE+A   A GK +SL+EQQLVDCAQAFNN GC GGLPSQAFEYI YN G+  E++YPY GKD  C+F+ +     V + VNITL  E  +  AV L  PVS AFEV + F  Y+
Sbjct:   42 KTYSSVE-YNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQNCSAT-KSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFNNHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKDSSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYK 261          
The following BLAST results are available for this feature:
BLAST of CX297899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
ALEUL_ARATH3.411e-10782.43Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
ALEU_ARATH1.097e-10581.98Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CYSP2_MAIZE1.876e-9777.23Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ORYC_ORYSJ3.538e-9675.34Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_SOLLC3.538e-9676.82Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
ALEU_HORVU3.661e-9373.99Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATH_PIG2.565e-5451.83Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_RAT2.171e-5350.90Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_BOVIN3.704e-5351.38Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATH_MOUSE1.407e-5250.45Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06006D09SK RindPdig24 Citrus clementina cDNA clone C06006D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297899 ID=CX297899; Name=CX297899; organism=Citrus clementina; type=EST; length=673bp
CACGTATGGGAAGATTTACGAGTCCGTTGAGGAGATGAAGCTCCGGTTCG
CGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACCAATTGCAAAGGC
CTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGACTGGAGCTGGGAAGA
GTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAACTGCTCTGCCACTACAA
AAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGACTGG
AGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTCACTGTGGATC
TTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCTTACCACCAGG
CCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTGTAGACTGTGCC
CAAGCTTTCAACAACCAGGGATGCAATGGTGGGTTGCCATCCCAAGCCTT
TGAATACATCAAGTACAATGGTGGCCTTGATACTGAGGAAGCATATCCCT
ACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTGGCGTC
CAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAATTACA
GCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGTAGTAG
ATGGATTCCGATTTTACAGAGTG
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