CX297901

Overview
NameCX297901
Unique NameCX297901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_ORYSJ (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Oryza sativa subsp. japonica GN=COQ5 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.613e-40
Identity = 77/92 (83.70%), Postives = 87/92 (94.57%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LKRGGRFLCLELSHVD+P+FKE+YD YSFSVIPA+GELVAGDR SYQYLVES+RRFP QEKFA MI +AGF++VEYENLVGGVVA+HSGLK+
Sbjct:  203 LKRGGRFLCLELSHVDVPLFKEIYDVYSFSVIPAVGELVAGDRQSYQYLVESIRRFPNQEKFAQMIQEAGFERVEYENLVGGVVAIHSGLKL 294          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_ARATH (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Arabidopsis thaliana GN=COQ5 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.297e-39
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LKRGGRFLCLELSHV+IPVFK LYD YSF VIP +GEL+AGDR SYQYLVESVRRFPPQE+FA+MI+DAGF+KVEYENLVGGVVA+HS +K+
Sbjct:  197 LKRGGRFLCLELSHVEIPVFKNLYDLYSFQVIPNLGELIAGDRESYQYLVESVRRFPPQERFASMIADAGFEKVEYENLVGGVVAIHSAIKL 288          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_CHICK (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Gallus gallus GN=COQ5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.940e-31
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LK GGRFLCLE SHV  P+   LYD YSF VIP +GE++AGD  SYQYLVES+RRFPPQE+  AMI DAGF KV+Y+NL  G+VA+HSG K+
Sbjct:  220 LKPGGRFLCLEFSHVSNPLLSRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPPQEELKAMIEDAGFLKVDYQNLNSGIVAIHSGFKL 311          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_BOVIN (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Bos taurus GN=COQ5 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LK GGRFLCLE S V+ P+   LYD YSF VIP +GE++AGD  SYQYLVES+R+FP QE+F  MI DAGFQKV YENL  G+VA+HSG K+
Sbjct:  236 LKPGGRFLCLEFSQVNNPLLSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRQFPSQEEFKEMIEDAGFQKVTYENLTSGIVAIHSGFKL 327          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_XENLA (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Xenopus laevis GN=coq5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LK GGRFLCLE SHV+ P+  ++YD YSF VIP +GE++A D  SYQYLVES+RRFP QE+F AMI DAGF KV Y NL  GVVA+HSG K+
Sbjct:  219 LKPGGRFLCLEFSHVNNPLLSKIYDVYSFQVIPVLGEVIAKDWKSYQYLVESIRRFPSQEEFKAMIEDAGFSKVNYHNLTSGVVAVHSGFKL 310          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_RAT (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Rattus norvegicus GN=Coq5 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.217e-29
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LK GGRFLCLE S V+ P+   LYD YSF VIP IGE++AGD  SYQYLVES+R+FP QE+F  MI DAGFQKV YE+L  G+VA+HSG K+
Sbjct:  236 LKPGGRFLCLEFSQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQYLVESIRKFPNQEEFKDMIEDAGFQKVTYESLTSGIVAIHSGFKL 327          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_PONAB (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Pongo abelii GN=COQ5 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.075e-29
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LK GGRFLCLE S V+ P+   LYD YSF VIP +GE++AGD  SYQYLVES+RRFP QE+F  MI DAGF KV YE+L  G+VA+HSG K+
Sbjct:  236 LKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKEMIEDAGFHKVTYESLTSGIVAIHSGFKL 327          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_HUMAN (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Homo sapiens GN=COQ5 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.711e-29
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LK GGRFLCLE S V+ P+   LYD YSF VIP +GE++AGD  SYQYLVES+RRFP QE+F  MI DAGF KV YE+L  G+VA+HSG K+
Sbjct:  236 LKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDMIEDAGFHKVTYESLTSGIVAIHSGFKL 327          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_MOUSE (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Mus musculus GN=Coq5 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.038e-29
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LK GGRFLCLE   V+ P+   LYD YSF VIP IGE++AGD  SYQYLVES+R+FP QE F  MI DAGFQ+V YENL  G+VA+HSG K+
Sbjct:  236 LKPGGRFLCLEFGQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQYLVESIRKFPNQEDFKDMIEDAGFQRVTYENLTTGIVAIHSGFKL 327          
BLAST of CX297901 vs. ExPASy Swiss-Prot
Match: COQ5_DANRE (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Danio rerio GN=coq5 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.942e-27
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 2
Query:   14 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVALHSGLKI 289
            LK GGRF+CLE S V  P+   LYD YSF +IP +GE++AGD  SYQYLVES+R+FP QE F  MI DAGF +V+Y NL GG+VA+HSG K+
Sbjct:  236 LKPGGRFMCLEFSKVTNPLLARLYDAYSFQMIPVLGEVIAGDWKSYQYLVESIRKFPDQEIFKEMIEDAGFFRVQYFNLTGGIVAIHSGFKL 327          
The following BLAST results are available for this feature:
BLAST of CX297901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
COQ5_ORYSJ2.613e-4083.70Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_ARATH1.297e-3982.61Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_CHICK4.940e-3167.39Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_BOVIN4.182e-3066.30Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_XENLA5.462e-3066.30Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_RAT1.217e-2966.30Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_PONAB2.075e-2965.22Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_HUMAN2.711e-2965.22Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_MOUSE6.038e-2965.22Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_DANRE1.942e-2761.96Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]

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Properties
Property NameValue
Genbank descriptionC06006D11SK RindPdig24 Citrus clementina cDNA clone C06006D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297901 ID=CX297901; Name=CX297901; organism=Citrus clementina; type=EST; length=574bp
GATTCGGCCGAGGCTGAAACGTGGAGGAAGATTTCTGTGCCTTGAGCTGA
GCCACGTCGATATTCCTGTATTCAAGGAATTGTACGATTATTACTCATTT
TCAGTCATTCCAGCAATAGGGGAACTGGTAGCAGGTGATCGGGGTTCTTA
TCAGTACTTGGTTGAGAGTGTCCGCCGTTTTCCCCCTCAGGAAAAATTCG
CTGCAATGATTTCTGATGCTGGATTTCAGAAGGTTGAGTATGAAAATCTT
GTTGGCGGAGTCGTCGCCTTACACTCAGGATTGAAAATTTAGAGGTGTAA
ATATGAACGAAAAATCCCATCTTACCCAATCTTTTGTTCGTTTGAATTTA
AATGTTGTTTTATTTATTGAAAGGAAAGAGAAAAAAAAAAAAAAAAATTT
CAGTTAGCCAAACTGAGCTAACTGTCCTCTGTAACTCTTACGTGTTGGTT
TTTTTTCCCTTGCATTTGATACTTTTTGAGTTAAATTAGAGAGAGACTAT
TCTATTCTTGTAAAAGTTGCTTCTAGATATTTCAGTAGAAGTTGTATGAA
AAAAAAAAAAAAAAAAAAAAAAAA
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