CX297905

Overview
NameCX297905
Unique NameCX297905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9589 contig Ccv1_Contig9589:271..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 8.866e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:   14 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.866e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:   14 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.975e-17
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            NQDKMICRKCYARLHPRAVNCR+KKCGHSNQLRPKKKIK
Sbjct:   14 NQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.505e-17
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            NQ KMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:   14 NQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.298e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            N DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:   14 NCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.298e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            N DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:   14 NCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.298e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            N DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:   14 NCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.298e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            N DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:   14 NCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.298e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            N DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:   14 NCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX297905 vs. ExPASy Swiss-Prot
Match: RL40_MOUSE (60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.298e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   30 NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 146
            N DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:   14 NCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
The following BLAST results are available for this feature:
BLAST of CX297905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL40_ORYSJ8.866e-18100.0060S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH8.866e-18100.0060S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_NICSY1.975e-1797.4460S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_BRARA7.505e-1797.4460S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_SHEEP8.298e-1689.7460S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT8.298e-1689.7460S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB8.298e-1689.7460S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG8.298e-1689.7460S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA8.298e-1689.7460S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]
RL40_MOUSE8.298e-1689.7460S ribosomal protein L40 OS=Mus musculus GN=Uba52... [more]

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Properties
Property NameValue
Genbank descriptionC06006E03SK RindPdig24 Citrus clementina cDNA clone C06006E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297905 ID=CX297905; Name=CX297905; organism=Citrus clementina; type=EST; length=475bp
GATTCGGCCGAGGCTTTGGCTCGTAAATCAATCAGGATAAGATGATTTGC
CGCAAATGTTATGCTCGTCTGCATCCCAGGGCTGTAAATTGCCGGAAGAA
GAAATGTGGCCACAGCAATCAGTTGAGGCCTAAGAAGAAGATCAAGTAGA
CCACTTGCCTTAGTCATGATATGTGCCTTCAGAGAGACATTCCAATTATG
AGATGTATTTTGTTTGTTTCTGAATAGGATTTGGGATTTGAATTAAGCGA
TCATCTAAGTTGGATTGAAGTTGATTCAGTTCAAGTGCAATTCTGTTAAA
CTTTTACCGTATGAAATTGGGATATATTTTTGAGCTAATTTTGTTTCATT
GTCGGTGTAATTTTTGGGACGGATTTATATCAAATTGGGATACATAAACN
TNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAACCTCGGGGGGGGGCCCGGT
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