CX297907

Overview
NameCX297907
Unique NameCX297907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25_NEUCR (40S ribosomal protein S25 OS=Neurospora crassa GN=rps-25 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.001e-26
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   21 MAPAATXXXXXXXXXXXXXXXXXAQHAVVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRAVTAE 308
            MAPAA+                 AQHAV+LDK+T+DKL KDVQSYRL+TVATLVDRLKINGSLAR+ L DLE  GQIK+VVGHS + IYTRA+ A+
Sbjct:    1 MAPAASGAKKQKKKWSKGKVKDKAQHAVILDKSTSDKLYKDVQSYRLVTVATLVDRLKINGSLARRCLKDLEEKGQIKQVVGHSKMKIYTRAIGAD 96          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25B_YEAST (40S ribosomal protein S25-B OS=Saccharomyces cerevisiae GN=RPS25B PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.545e-14
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   90 AQHAVVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRAVTAE 308
            AQHAV+LD+   D++ K+V +YR ++V+ LVDRLKI GSLAR AL  LE  G IK +  HS  +IYTRA  +E
Sbjct:   36 AQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAAASE 108          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25A_YEAST (40S ribosomal protein S25-A OS=Saccharomyces cerevisiae GN=RPS25A PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.545e-14
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   90 AQHAVVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRAVTAE 308
            AQHAV+LD+   D++ K+V +YR ++V+ LVDRLKI GSLAR AL  LE  G IK +  HS  +IYTRA  +E
Sbjct:   36 AQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRATASE 108          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25_ASHGO (40S ribosomal protein S25 OS=Ashbya gossypii GN=RPS25 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.635e-14
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   90 AQHAVVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRAVTAE 308
            AQHAV+LD+   D++ K+V +YR ++V+ LVDRLKI GS+AR AL  LE  G IK +  HS  +IYTRA  +E
Sbjct:   36 AQHAVILDQDKLDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLETEGIIKPISKHSKQAIYTRATASE 108          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25B_SCHPO (40S ribosomal protein S25-B OS=Schizosaccharomyces pombe GN=rps25b PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.495e-14
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 3
Query:   90 AQHAVVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRAVTA 305
            AQHA V DK+  D++ K+V +++ I+V+ LVDR+KINGSLAR A+ DL   G I+KV  HS  +IYTRA  +
Sbjct:   16 AQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRAAAS 87          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25A_SCHPO (40S ribosomal protein S25-A OS=Schizosaccharomyces pombe GN=rps25a PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.001e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 3
Query:   90 AQHAVVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRAVTA 305
            AQHA V DK+  D++ K+V +++ I+V+ LVDR+KINGSLAR A+ DL   G I+KV  HS  +IYTR   A
Sbjct:   16 AQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRVPAA 87          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25_CANGA (40S ribosomal protein S25 OS=Candida glabrata GN=RPS25 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 3
Query:   90 AQHAVVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRA 296
            AQHAV+LD+   D++ K+V +YR ++V+ LVDRLKI GS+AR AL  LE  G IK +  HS  +IYTRA
Sbjct:   36 AQHAVILDQEKFDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLEREGIIKPISKHSKQAIYTRA 104          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  102 VVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRA 296
            V+ DKAT DKL K+V SY+LIT + + +RLKI GSLAR AL +L + G IK V  HS+  IYTRA
Sbjct:   44 VLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRA 108          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  102 VVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRA 296
            V+ DK+T DKL  +   Y+LIT + L DRL+I+GSLAR+A+ DL A G I+ V  H+S  IYTRA
Sbjct:   41 VLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRA 105          
BLAST of CX297907 vs. ExPASy Swiss-Prot
Match: RS25_DROME (40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  102 VVLDKATNDKLQKDVQSYRLITVATLVDRLKINGSLARQALNDLEANGQIKKVVGHSSLSIYTRAVTAE 308
            V+ DKAT +KL K+V +Y+LIT + + +RLKI GSLA++AL +L   G IK+VV H S  IYTRA   +
Sbjct:   47 VLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGD 115          
The following BLAST results are available for this feature:
BLAST of CX297907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RS25_NEUCR3.001e-2663.5440S ribosomal protein S25 OS=Neurospora crassa GN=... [more]
RS25B_YEAST1.545e-1454.7940S ribosomal protein S25-B OS=Saccharomyces cerev... [more]
RS25A_YEAST1.545e-1454.7940S ribosomal protein S25-A OS=Saccharomyces cerev... [more]
RS25_ASHGO2.635e-1453.4240S ribosomal protein S25 OS=Ashbya gossypii GN=RP... [more]
RS25B_SCHPO4.495e-1452.7840S ribosomal protein S25-B OS=Schizosaccharomyces... [more]
RS25A_SCHPO1.001e-1352.7840S ribosomal protein S25-A OS=Schizosaccharomyces... [more]
RS25_CANGA1.308e-1355.0740S ribosomal protein S25 OS=Candida glabrata GN=R... [more]
RS25_BRABE1.889e-1258.4640S ribosomal protein S25 OS=Branchiostoma belcher... [more]
RS25_SOLLC7.177e-1253.8540S ribosomal protein S25 OS=Solanum lycopersicum ... [more]
RS25_DROME1.224e-1152.1740S ribosomal protein S25 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC06006E05SK RindPdig24 Citrus clementina cDNA clone C06006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297907 ID=CX297907; Name=CX297907; organism=Citrus clementina; type=EST; length=526bp
GATTCGGCCGAGGCCGACAAATGGCGCCCGCAGCAACTGGAGGCAAGAAG
CAAAAGAAGAAGTGGTCCAAGGGCAAGGTCAAGGACAAGGCCCAGCACGC
CGTCGTTCTCGACAAGGCCACCAACGACAAGCTCCAGAAGGATGTCCAGT
CCTACCGTCTGATCACTGTCGCCACCCTTGTCGATCGTCTCAAGATCAAC
GGCAGCCTTGCCCGCCAGGCTCTCAACGACCTTGAGGCTAACGGCCAGAT
CAAGAAGGTCGTTGGTCACTCCAGCCTGAGCATCTACACCCGTGCCGTCA
CCGCCGAGTAAACGTCTCGTCTCTCGTCTTTTCTCGCGGTTTTCTTTTCC
TTGCTACGAATGATATCATTTACCATAGGAAGCCCGGCTGGGCATGATGC
ATAGTGGATTAACGTCGGACTCTTGAAGAGTGTGGAACATTCGCACTCTT
GGCCCACGTCAGGTAGTGCGAACTGAATCAAAAAATCTACAAAACTTCAT
GAANAANAAAAAAAAAAAAAAAAAAA
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