CX297912

Overview
NameCX297912
Unique NameCX297912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297912 vs. ExPASy Swiss-Prot
Match: P2A09_ARATH (Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana GN=PP2A9 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.889e-37
Identity = 88/178 (49.44%), Postives = 107/178 (60.11%), Query Frame = 1 
Query:   16 KKPHHEAEQEAVEWNAERTEATIKPGGLNIVWGSDPRYWHLPEKRSNDPVELVQVCWLEVTGSVE-VKHGKKYQIGFKISLKADAFGWGGCPVFMMAKLGKKGKYTSRKMKPLDHL------GKEAAEIPDEK---VEILVPEQGENQ---LYFGLYEVWNGKWKGGLLIHHAFIREV 510
            K  HH+A+ + +E +  R     +P GLN VWG D RYW +P K    P EL  V WLEVTGS + ++ GK Y+IGFKIS K DA GW   PVFM AK+GKKGK   +++K +         G E   IPDE     EILV     NQ   L FGLYEVW G+WK GLLIH AF++EV
Sbjct:    5 KSSHHKADSK-MEQDNNRKAWISQPSGLNFVWGGDSRYWVIP-KEPRMPAELKMVSWLEVTGSFDKIEPGKTYRIGFKISFKPDATGWDKAPVFMSAKIGKKGKTVWKRIKSVSQNFGILKGGSEPVNIPDESDGLFEILVSPTALNQDTKLQFGLYEVWTGRWKTGLLIHEAFVQEV 180
The following BLAST results are available for this feature:
BLAST of CX297912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
P2A09_ARATH3.889e-3749.44Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06006E10SK RindPdig24 Citrus clementina cDNA clone C06006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297912 ID=CX297912; Name=CX297912; organism=Citrus clementina; type=EST; length=687bp
TCTTCACATGTCTTCAAAAAACCACATCATGAAGCAGAACAGGAGGCAGT
GGAATGGAACGCGGAGAGAACGGAGGCAACCATAAAACCCGGGGGATTAA
ACATTGTCTGGGGCAGTGACCCTCGCTATTGGCATCTACCTGAAAAAAGG
TCGAATGATCCTGTAGAACTAGTTCAAGTATGTTGGCTTGAAGTAACAGG
TTCAGTAGAAGTAAAGCACGGGAAGAAGTATCAAATTGGGTTCAAGATCT
CTCTGAAAGCGGACGCCTTCGGCTGGGGCGGCTGTCCAGTTTTTATGATG
GCTAAGCTAGGCAAGAAGGGAAAGTATACCTCGAGAAAAATGAAGCCACT
TGATCACCTTGGAAAGGAAGCCGCTGAAATTCCTGACGAAAAGGTTGAGA
TTCTGGTTCCGGAACAAGGCGAAAACCAGCTCTATTTTGGACTGTATGAG
GTATGGAATGGAAAGTGGAAGGGAGGTTTGCTAATTCACCATGCATTCAT
CAGAGAAGTGAAATAACTTACCAAAACGATTTGAGTATTGATGTTTCTAT
TAATAATTCCCGGATCATGGGCCTCCGTACTATGATTCGTAATAACTGGA
CGTGGAATTAATATGAACCACAAATAAATCCCCACTTTAGTTTTGCTAAT
TTGCATGCACTGGGTGTATACAGGGCAAATTATGTCC
back to top