CX297913

Overview
NameCX297913
Unique NameCX297913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297913_ssr458 microsatellite CX297913_ssr458:458..469. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1293 contig Ccv1_Contig1293:35..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297913 vs. ExPASy Swiss-Prot
Match: ATP5E_ARATH (ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.579e-32
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 3 
Query:   36 MASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPE 242
            MASNAAVPFWRAAGMTYISYSNICAN+VRNCLKEP+K EALTREKVHFS+SKW DGKPQKP +RSDTPE
Sbjct:    1 MASNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKPQKPVLRSDTPE 69
[Close]
BLAST of CX297913 vs. ExPASy Swiss-Prot
Match: ATP5E_IPOBA (ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.637e-31
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:   36 MASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPEE 245
            MASNAAVPFWRAAGMTYI+YSN+CAN+VRNCLKEPY+ EAL+REKVHFS SKW DGKPQKP IRSDT EE
Sbjct:    1 MASNAAVPFWRAAGMTYITYSNLCANMVRNCLKEPYRAEALSREKVHFSFSKWVDGKPQKPAIRSDTGEE 70
[Close]
BLAST of CX297913 vs. ExPASy Swiss-Prot
Match: ATP5E_MAIZE (ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 3 
Query:   39 ASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPE 242
            A+ AAVPFWRAAGMTYI YSNICA LVRNCLKEP+K+EA +REKVHFSISKWTDGK +KPT+R+++ +
Sbjct:    3 ATTAAVPFWRAAGMTYIGYSNICAALVRNCLKEPFKSEAASREKVHFSISKWTDGKQEKPTVRTESDD 70
The following BLAST results are available for this feature:
BLAST of CX297913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATP5E_ARATH4.579e-3289.86ATP synthase subunit epsilon, mitochondrial OS=Ara... [more]
ATP5E_IPOBA8.637e-3185.71ATP synthase subunit epsilon, mitochondrial OS=Ipo... [more]
ATP5E_MAIZE3.755e-2676.47ATP synthase subunit epsilon, mitochondrial OS=Zea... [more]
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Properties
Property NameValue
Genbank descriptionC06006E11SK RindPdig24 Citrus clementina cDNA clone C06006E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297913 ID=CX297913; Name=CX297913; organism=Citrus clementina; type=EST; length=581bp
AGAGAGCAAGAGAGAAAGAAGAAAGAAAAAAGCAAATGGCTTCAAACGCA
GCGGTGCCGTTTTGGAGAGCAGCGGGGATGACATACATATCGTACTCGAA
CATCTGTGCGAATCTGGTGAGGAATTGTCTCAAGGAACCTTACAAAACCG
AGGCCCTCACTCGCGAGAAGGTTCACTTCTCTATCTCTAAGTGGACCGAT
GGCAAACCCCAGAAACCCACTATTCGTTCTGATACTCCGGAAGAATGAGT
CCAATGGTAAATTCGTGTCCAAATGTCAGTGTGGAGTGGAACAATGTGTG
CGGCAAAGCTTTTTTCTGTTTCATTATTTGGTAGATTTAATCTTATTGGG
TCAGTAATGCATAAAACTCTCGAACAACATTTGCATTTCTGTTTCTGCAT
GGCAAATGCATTTGTAATAATTTAACTGGCATTGACCTACTTTGGAAACT
AGACTTATGTTTGTTTGTTCTTCATAGAAATTGATGGATATATATTTTCC
AAGTGATGTTGGTGTGATTTTCAGTAGTAAGAATGGTGGGATTTGCATGT
CCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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