CX297915

Overview
NameCX297915
Unique NameCX297915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297915_ssr316 microsatellite CX297915_ssr316:316..327. BLAST: Citrus ESTs to Prunus persica proteins V1
CX297915_ssr1 microsatellite CX297915_ssr1:1..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13010 contig Ccv1_Contig13010:271..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297915 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.883e-18
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:  151 MAEEHRCQAPRLCVNNCGFFGSPTTXNLCSKCFRDLQLKAQQSSSAKHALNQTL 312
            MAEEHR Q PRLC NNCGFFGS  T NLCSKCFRDLQ + Q SS+AKHAL Q+L
Sbjct:    1 MAEEHRLQEPRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSL 54
[Close]
BLAST of CX297915 vs. ExPASy Swiss-Prot
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.625e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  151 MAEEHRCQAP---RLCVNNCGFFGSPTTXNLCSKCFRDLQLKAQQSSSAKHALNQTL 312
            MAEEHRC+ P   RLCVNNCGFFGS  T NLCS C+ DL LK QQ +S K  +  +L
Sbjct:    1 MAEEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSL 57
[Close]
BLAST of CX297915 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.621e-13
Identity = 39/63 (61.90%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  151 MAEEHRCQAP---RLCVNNCGFFGSPTTXNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSV 330
            MAEEHRCQ P   RLCVNNCGF GS  T NLCS C+ DL LK QQ SS   ++  T+ SS SV
Sbjct:    1 MAEEHRCQTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSS---SIKSTVESSLSV 60
The following BLAST results are available for this feature:
BLAST of CX297915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SAP3_ARATH4.883e-1875.93Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ARATH1.625e-1361.40Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ARATH3.621e-1361.90Zinc finger A20 and AN1 domain-containing stress-a... [more]
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Properties
Property NameValue
Genbank descriptionC06006F01SK RindPdig24 Citrus clementina cDNA clone C06006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297915 ID=CX297915; Name=CX297915; organism=Citrus clementina; type=EST; length=355bp
CTTTCTTTCTTTCTTTCTTACCAAAATCCCAATTACCAAACAGAAGACAA
AGGCTAATCCTCCTTATATATTTCCTTTCCAGTCGTCCCTTTTTGAAAAA
TCAATCAATTTCAGCAAATTATTCCTGAAAATATTGTTTACAGGTTGAAG
ATGGCGGAAGAGCACAGATGTCAAGCACCCCGTTTGTGCGTGAACAACTG
CGGATTTTTCGGGAGCCCAACAACTCANAATCTCTGCTCCAAATGTTTTC
GCGATCTTCAGTTGAAAGCACAACAATCTTCCTCGGCCAAACACGCCCTT
AACCAAACCCTGATTTCGTCGTCGTCGGTTGATTTGTCTCTGCGCGAGAG
ACCGG
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