CX297916

Overview
NameCX297916
Unique NameCX297916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length357
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:458..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 4.538e-40
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 3
Query:   12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356
            C+ AA ML+ + ++VTVADARFCKPLD  LIR LA  HE+LITVEEGS+GGFGSHV  FL L G+LDG LK R MVLPDRYIDHG+PADQL E+GL   HI+AT L+L+G P+EA
Sbjct:  601 CLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREA 715          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.725e-39
Identity = 74/116 (63.79%), Postives = 96/116 (82.76%), Query Frame = 3
Query:    9 HCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356
            +C+ AA++++   + VTVADARFCKPLD  LIR+LA+ HE+L+TVEEGS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EA
Sbjct:  596 YCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREA 711          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.725e-39
Identity = 75/116 (64.66%), Postives = 96/116 (82.76%), Query Frame = 3
Query:    9 HCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356
            +C+ AA++L+S+ + VTVADARFCKPLD  LIR LA  HE+L+TVE+GS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EA
Sbjct:  599 NCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREA 714          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.911e-30
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 3
Query:   15 VLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 341
            +LAA  L ++ +S TVADARF KP+D  LIR+LA +HE+LITVEEGS+GGFGS+V HFL  SG+LD  LK+R MVLPD + D  +PA Q +E+GL++RHI  T L  LG
Sbjct:  522 LLAAEDLNARGLSTTVADARFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.604e-29
Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 3
Query:   12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356
            C++AA  L++  +S TVADARF KPLD DLIR+LA EHE+L+TVEEGS+GGFG+HV HFL   G+L+  LK+R +V+PD ++D   P     ++GL +  I  TV + LG+ ++A
Sbjct:  533 CMIAAEELEAAGLSTTVADARFAKPLDADLIRRLAREHEVLVTVEEGSIGGFGAHVLHFLAHEGLLENGLKVRPLVMPDIFMDQAKPEKMYAKAGLDAAGIVKTVFAALGQAEQA 647          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.148e-29
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 3
Query:   21 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGP-LKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356
            AA  L S  ISVTVADARF KPLD DL+R+LA  HE+LIT+EEGSVGGFGS V   L   G+LDG  LK RSMVLPD ++DH  P     ++GL ++ I A VL+ LGR  EA
Sbjct:  524 AAEQLASYGISVTVADARFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.029e-29
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 3
Query:   12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 344
            C+LAA  L +  +S TVADARF KPLD DLIRQLA  HE++ITVEEGS+GGFGSHV HFL   G+LD  LKLRS+V+PD +++   P      +GL    I +TV   LGR
Sbjct:  520 CLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFGSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFKALGR 630          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27
Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = 3
Query:   12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356
            C  AA  L +  +S TVADARF KPLD DL+ +LANEHEILIT+EEGS+GGFGSHV   L+  G LDG +K+R+MVLPD ++DH +PA     +GL ++ I   V   LG+   A
Sbjct:  518 CEKAAEELATLGLSTTVADARFMKPLDVDLVIKLANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPAAMYAAAGLDAKAIVKKVFEALGKEHAA 632          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 3
Query:   21 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 350
            AA+ L ++ ++ TV DARF KPLD +LI +LA EHE+LITVEEGSVGGFGSHV H L   G LD  LK+R + LPD +++H +PA Q E+ GL++  I ATVL+ LG  +
Sbjct:  530 AADELAARGLAPTVVDARFMKPLDEELILRLAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEAR 639          
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27
Identity = 62/111 (55.86%), Postives = 75/111 (67.57%), Query Frame = 3
Query:   12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 344
            C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  519 CLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
The following BLAST results are available for this feature:
BLAST of CX297916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
DXS_ARATH4.538e-4068.70Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ1.725e-3963.79Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN1.725e-3964.66Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHOCS1.911e-3059.631-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_MESSB3.604e-2951.301-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_BEII96.148e-2959.291-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_RHIL38.029e-2956.761-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHOP21.159e-2753.911-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_MAGSA1.159e-2755.451-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_BRUSU1.159e-2755.861-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionC06006F02SK RindPdig24 Citrus clementina cDNA clone C06006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297916 ID=CX297916; Name=CX297916; organism=Citrus clementina; type=EST; length=357bp
GGGGTCCACACTGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAA
GAAGCCC
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