CX297916
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2) HSP 1 Score: 162.925 bits (411), Expect = 4.538e-40 Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 3 Query: 12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356 C+ AA ML+ + ++VTVADARFCKPLD LIR LA HE+LITVEEGS+GGFGSHV FL L G+LDG LK R MVLPDRYIDHG+PADQL E+GL HI+AT L+L+G P+EA Sbjct: 601 CLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREA 715
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 1.725e-39 Identity = 74/116 (63.79%), Postives = 96/116 (82.76%), Query Frame = 3 Query: 9 HCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356 +C+ AA++++ + VTVADARFCKPLD LIR+LA+ HE+L+TVEEGS+GGFGSHV F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+ HI+ATV ++LG+ +EA Sbjct: 596 YCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREA 711
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.725e-39 Identity = 75/116 (64.66%), Postives = 96/116 (82.76%), Query Frame = 3 Query: 9 HCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356 +C+ AA++L+S+ + VTVADARFCKPLD LIR LA HE+L+TVE+GS+GGFGSHV F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+ HI+ATV ++LG+ +EA Sbjct: 599 NCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREA 714
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.911e-30 Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 3 Query: 15 VLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 341 +LAA L ++ +S TVADARF KP+D LIR+LA +HE+LITVEEGS+GGFGS+V HFL SG+LD LK+R MVLPD + D +PA Q +E+GL++RHI T L LG Sbjct: 522 LLAAEDLNARGLSTTVADARFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 3.604e-29 Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 3 Query: 12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356 C++AA L++ +S TVADARF KPLD DLIR+LA EHE+L+TVEEGS+GGFG+HV HFL G+L+ LK+R +V+PD ++D P ++GL + I TV + LG+ ++A Sbjct: 533 CMIAAEELEAAGLSTTVADARFAKPLDADLIRRLAREHEVLVTVEEGSIGGFGAHVLHFLAHEGLLENGLKVRPLVMPDIFMDQAKPEKMYAKAGLDAAGIVKTVFAALGQAEQA 647
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.148e-29 Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 3 Query: 21 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGP-LKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356 AA L S ISVTVADARF KPLD DL+R+LA HE+LIT+EEGSVGGFGS V L G+LDG LK RSMVLPD ++DH P ++GL ++ I A VL+ LGR EA Sbjct: 524 AAEQLASYGISVTVADARFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 8.029e-29 Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 3 Query: 12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 344 C+LAA L + +S TVADARF KPLD DLIRQLA HE++ITVEEGS+GGFGSHV HFL G+LD LKLRS+V+PD +++ P +GL I +TV LGR Sbjct: 520 CLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFGSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFKALGR 630
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27 Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = 3 Query: 12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 356 C AA L + +S TVADARF KPLD DL+ +LANEHEILIT+EEGS+GGFGSHV L+ G LDG +K+R+MVLPD ++DH +PA +GL ++ I V LG+ A Sbjct: 518 CEKAAEELATLGLSTTVADARFMKPLDVDLVIKLANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPAAMYAAAGLDAKAIVKKVFEALGKEHAA 632
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27 Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 3 Query: 21 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 350 AA+ L ++ ++ TV DARF KPLD +LI +LA EHE+LITVEEGSVGGFGSHV H L G LD LK+R + LPD +++H +PA Q E+ GL++ I ATVL+ LG + Sbjct: 530 AADELAARGLAPTVVDARFMKPLDEELILRLAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEAR 639
BLAST of CX297916 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27 Identity = 62/111 (55.86%), Postives = 75/111 (67.57%), Query Frame = 3 Query: 12 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 344 C+ AA L + +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV FL G+LD LK+R++ LPD Y DHG P E+GL I TV + L R Sbjct: 519 CLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629 The following BLAST results are available for this feature:
BLAST of CX297916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 208
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX297916 ID=CX297916; Name=CX297916; organism=Citrus clementina; type=EST; length=357bpback to top |