CX297917

Overview
NameCX297917
Unique NameCX297917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig278 contig Ccv1_Contig278:330..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA_TOBAC (Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.263e-89
Identity = 164/173 (94.80%), Postives = 172/173 (99.42%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 525
            ADDGSDTVTFMF+SPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEF+RICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRY+NSFT+ATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE+ETKP
Sbjct:   92 ADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFSRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEEETKP 264          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA1_DAUCA (Proliferating cell nuclear antigen OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 8.189e-89
Identity = 163/173 (94.22%), Postives = 172/173 (99.42%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 525
            ADDGSDTVTFMF+SPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRYMNSFT+A+PLS+TVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE+EDE+KP
Sbjct:   92 ADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYMNSFTKASPLSSTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEEEDESKP 264          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA_SOYBN (Proliferating cell nuclear antigen (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.069e-88
Identity = 160/175 (91.43%), Postives = 174/175 (99.43%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQV 531
            ADDGSDTVTFMF+SPTQDKI+DFEMKLMDIDSEHLGIPEAEYHAIV+MPS+EFARICKDL+SIGDTVVISVTKEGVKFST+GDIGTANIV RQNT+VDKPEEAT+IEM+EPVSLTFALRYMNSFT+ATPLSNTVTISLS+ELPVVVEYKIAEMGY+RFYLAPKIEEDE++TKPQV
Sbjct:   62 ADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVKMPSSEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTSVDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSNTVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDEEDTKPQV 236          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA_CATRO (Proliferating cell nuclear antigen OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 1.707e-86
Identity = 159/170 (93.53%), Postives = 168/170 (98.82%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 516
            ADDGSDTVTFMF+SPTQDKI+DFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKP+EATIIEM+EPVSLTFALRY+NSFT+ATPLSN VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED++E
Sbjct:   92 ADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPDEATIIEMNEPVSLTFALRYLNSFTKATPLSNNVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDDEE 261          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA_PEA (Proliferating cell nuclear antigen OS=Pisum sativum GN=PCNA PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.230e-86
Identity = 156/174 (89.66%), Postives = 172/174 (98.85%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 528
            ADDGSDTVTFMF+SPTQDKI+DFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVVI+V+KEGVKFST+GDIG+ANIV RQNTTVDKPEEAT+IEM+EPV+L FALRYMNSFT+ATPLS++VTISLS+ELPVVVEYKIAEMGY+RFYLAPKIEEDE+ETKPQ
Sbjct:   92 ADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVIAVSKEGVKFSTKGDIGSANIVCRQNTTVDKPEEATVIEMNEPVALQFALRYMNSFTKATPLSSSVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDEEETKPQ 265          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA_POPNI (Proliferating cell nuclear antigen OS=Populus nigra GN=PCNA PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 6.488e-86
Identity = 156/169 (92.31%), Postives = 167/169 (98.82%), Query Frame = 1
Query:   10 DDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 516
            DDGSDTVTFMF+SPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIV+MPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPE+AT+IEM+EPVS+TFALRYMNSFT+ATPLSNTVTIS+S +LPVVVEYKIAEMGY+RFYLAPK+EEDE E
Sbjct:   93 DDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVKMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEDATVIEMNEPVSMTFALRYMNSFTKATPLSNTVTISMSPDLPVVVEYKIAEMGYVRFYLAPKMEEDEPE 261          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA2_ARATH (Proliferating cell nuclear antigen 2 OS=Arabidopsis thaliana GN=At2g29570 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 2.726e-84
Identity = 155/174 (89.08%), Postives = 169/174 (97.13%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 528
            ADDGSDTVTFMF+SPTQDKIADFEMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL+SIGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEE+ED TKP+
Sbjct:   92 ADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED-TKPE 264          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA1_ARATH (Proliferating cellular nuclear antigen 1 OS=Arabidopsis thaliana GN=PCNA PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.145e-82
Identity = 151/169 (89.35%), Postives = 164/169 (97.04%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 513
            ADDG DTVTFMF+SPTQDKIADFEMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL+SIGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEE+ED
Sbjct:   92 ADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED 260          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA_BRANA (Proliferating cell nuclear antigen OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.352e-82
Identity = 149/170 (87.65%), Postives = 165/170 (97.06%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 516
            ADDG DTVTFMF+SP QDKIADFEMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL++IGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEEDE++
Sbjct:   92 ADDGGDTVTFMFESPKQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSTIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEDEED 261          
BLAST of CX297917 vs. ExPASy Swiss-Prot
Match: PCNA_ORYSJ (Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica GN=Os02g0805200 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 3.684e-81
Identity = 150/169 (88.76%), Postives = 161/169 (95.27%), Query Frame = 1
Query:    7 ADDGSDTVTFMFQSPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 513
            ADDGSDTVTFMF+SP QDKIADFEMKLMDIDSEHLGIP++EY AIVRMPS+EF+RICKDL+SIGDTV+ISVTKEGVKFST GDIGTANIV RQN TVDKPE+ATIIEM EPVSLTFALRYMNSFT+A+PLS  VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE+
Sbjct:   92 ADDGSDTVTFMFESPNQDKIADFEMKLMDIDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANIVCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 260          
The following BLAST results are available for this feature:
BLAST of CX297917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PCNA_TOBAC1.263e-8994.80Proliferating cell nuclear antigen OS=Nicotiana ta... [more]
PCNA1_DAUCA8.189e-8994.22Proliferating cell nuclear antigen OS=Daucus carot... [more]
PCNA_SOYBN1.069e-8891.43Proliferating cell nuclear antigen (Fragment) OS=G... [more]
PCNA_CATRO1.707e-8693.53Proliferating cell nuclear antigen OS=Catharanthus... [more]
PCNA_PEA2.230e-8689.66Proliferating cell nuclear antigen OS=Pisum sativu... [more]
PCNA_POPNI6.488e-8692.31Proliferating cell nuclear antigen OS=Populus nigr... [more]
PCNA2_ARATH2.726e-8489.08Proliferating cell nuclear antigen 2 OS=Arabidopsi... [more]
PCNA1_ARATH1.145e-8289.35Proliferating cellular nuclear antigen 1 OS=Arabid... [more]
PCNA_BRANA4.352e-8287.65Proliferating cell nuclear antigen OS=Brassica nap... [more]
PCNA_ORYSJ3.684e-8188.76Proliferating cell nuclear antigen OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC06006F03SK RindPdig24 Citrus clementina cDNA clone C06006F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297917 ID=CX297917; Name=CX297917; organism=Citrus clementina; type=EST; length=628bp
CGAGGGGCCGACGACGGCAGCGATACCGTTACTTTCATGTTTCAAAGTCC
CACTCAAGATAAGATTGCTGATTTTGAGATGAAACTGATGGACATTGATA
GTGAGCATCTTGGTATACCGGAGGCTGAATACCATGCCATTGTAAGGATG
CCTTCAGCTGAGTTTGCTAGAATTTGTAAAGATCTTGCCAGCATTGGTGA
CACAGTCGTGATTTCTGTCACAAAGGAGGGTGTGAAGTTCTCTACCAGAG
GTGATATTGGAACTGCTAATATTGTGCTCAGGCAAAATACTACAGTAGAC
AAGCCAGAAGAAGCAACAATAATTGAAATGCATGAGCCAGTGTCATTGAC
TTTTGCTCTGAGATACATGAATTCATTCACAAGGGCTACTCCACTGTCGA
ATACTGTTACTATCAGCCTATCCTCAGAATTGCCAGTTGTGGTCGAATAC
AAGATTGCTGAGATGGGTTATATTAGATTCTACTTGGCACCCAAGATAGA
AGAAGATGAGGATGAGACCAAGCCTCAAGTTTAAGTGTCATTTGGCACGT
AGGCTATGGCATTTTGTTGAATCAAGTTACTCCTATATTTTAAGTTTGCT
TTTAGAATGTTTCTCGTAAATCTTCATG
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