CX297919

Overview
NameCX297919
Unique NameCX297919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297919_ssr465 microsatellite CX297919_ssr465:465..476. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15236 contig Ccv1_Contig15236:642..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297919 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 PPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 128
            PPT +SK+FK+QCPQAYSYAYDD++STF+C GGPNY+ITFCP
Sbjct:  203 PPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFCP 244          
BLAST of CX297919 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.428e-15
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 PPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 128
            PPT+YS+IF+ QCPQAYSYAYDD+ STF+C+GGP+Y ITFCP
Sbjct:  171 PPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 212          
BLAST of CX297919 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.428e-15
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 PPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 128
            PPT+YS+IF+ QCPQAYSYAYDD+ STF+C+GGP+Y ITFCP
Sbjct:  205 PPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 246          
BLAST of CX297919 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.096e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:    3 PPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 128
            P TKYS+IFK QCPQAYSYAYDD TSTF+C+G P+Y ITFCP
Sbjct:  202 PATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFCP 243          
BLAST of CX297919 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.583e-13
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 3
Query:    3 PPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 128
            PPT YS+IF + CP AYSYAYDD+  TF+C GGPNY ITFCP
Sbjct:  204 PPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 245          
BLAST of CX297919 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 3
Query:    3 PPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 128
            PP  YSK+FK QCPQAYSYAYDD++STF+C+G P Y ITFCP
Sbjct:  205 PPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFCP 246          
BLAST of CX297919 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.701e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 3
Query:    3 PPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 128
            PPT YS+IFK+ CP AYSYAYDD TSTF+CTG  NY+ITFCP
Sbjct:  199 PPTDYSRIFKNACPDAYSYAYDDETSTFTCTGA-NYEITFCP 239          
BLAST of CX297919 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.858e-13
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3
Query:    3 PPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 128
            PPT YS+IF +QCP AYSYA+DD    F+C+GGPNY ITFCP
Sbjct:  201 PPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFCP 242          
The following BLAST results are available for this feature:
BLAST of CX297919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TLP1_PYRPY3.408e-1678.57Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TP1B_MALDO6.428e-1576.19Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TP1A_MALDO6.428e-1576.19Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP1_CASSA1.096e-1478.57Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP_PRUAV1.583e-1371.43Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLP1_PRUPE2.068e-1373.81Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
PR5_ARATH2.701e-1376.19Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP2_PRUPE7.858e-1369.05Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionC06006F05SK RindPdig24 Citrus clementina cDNA clone C06006F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297919 ID=CX297919; Name=CX297919; organism=Citrus clementina; type=EST; length=508bp
GCCCACCGACTAAATATTCTAAGATTTTCAAAGACCAGTGCCCTCAAGCT
TATAGCTATGCTTATGATGATCGCACTAGCACATTTTCTTGCACTGGTGG
TCCTAATTACGATATTACTTTCTGTCCCTGAGAGATATTAGTAAGTAACG
GAGGTTGCCTAAAACTTTCAGCTTAAAATTTTAACATAATTTTAAGGTAA
TGATATCATGCAATATTTAATAGTAGATGATGAAAATAAAAGATAATTTT
TTGTGGTATCAAATTCATTCATCATCTCTGTTAAATAAATTGCTTGAAAT
CATGGACTCAAAATTCATGTTAAGATTTAAGTTAAAATAGCACCATCAAT
CCTCTGTAAGCTTGAAATAAAAGTAATAAGTTGTCACATTGTATCAACAA
AATAAGTCCTGACAATGGACGACTTTCTATGCTAATATTTGTCATGGTGT
ATGTATGACAAAACATAAATAAATAAGAGAAAGTTATCATAAAAAAAAAA
AAAAAAAA
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