CX298052

Overview
NameCX298052
Unique NameCX298052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14089 contig Ccv1_Contig14089:31..572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  378 EPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDPTG
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.204e-26
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  378 EPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.204e-26
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTG
Sbjct:  378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.171e-26
Identity = 54/59 (91.53%), Postives = 59/59 (100.00%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+K+V+KKDPTG
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.223e-25
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  378 EPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.597e-25
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 2 
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP+G
Sbjct:  378 EPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
The following BLAST results are available for this feature:
BLAST of CX298052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
EF1A_VICFA1.106e-2696.61Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA1.106e-2696.61Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_ORYSJ1.106e-2696.61Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE1.106e-2696.61Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_TOBAC2.465e-2694.92Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOYBN4.204e-2694.92Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH4.204e-2694.92Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_SOLLC7.171e-2691.53Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A2_DAUCA1.223e-2594.92Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_MANES1.597e-2594.92Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06008B01SK RindPdig24 Citrus clementina cDNA clone C06008B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298052 ID=CX298052; Name=CX298052; organism=Citrus clementina; type=EST; length=542bp
AGGGGAGCCCAAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGA
TTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGATTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGTGTTGAGAAGAAGGATCCCACAGGTGCGAAGGTCACCAAGTCCG
CAGCCAAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGG
GTTTATTTTCTGTCTTTTTTTATTTTCTTGTCTGTTTTTGTTTTGCATCA
ATGTTTCTGCAAACAGCCCTATTTGGTTCCACCAGTTTGCTGTTGAGCAA
TTGGGATGTTATCTTTCTGCTTAACTGGCTGTGGTGGGGGTTCGGATTTT
TATATTCTGAATTTGGTTAATAGCATTAAATTGAGTTGTGAAGTTTATAG
ACCAGCTGCTGGATGTCAAAGTTGGTGGTTTTAATACATTTGGAAGCTCA
TTTTAAGCTCTTTAAAAAAAANAAAAAAAAAAAAAAAAAAAN
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