CX298060

Overview
NameCX298060
Unique NameCX298060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3858 contig Ccv1_Contig3858:294..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298060 vs. ExPASy Swiss-Prot
Match: CNOT3_MOUSE (CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.671e-36
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  223 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 597
            +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS     T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY+YFD+
Sbjct:  608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-----TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY 727
[Close]
BLAST of CX298060 vs. ExPASy Swiss-Prot
Match: CNOT3_HUMAN (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.671e-36
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  223 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 597
            +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS     T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY+YFD+
Sbjct:  610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-----TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY 729
[Close]
BLAST of CX298060 vs. ExPASy Swiss-Prot
Match: NOT3_SCHPO (General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe GN=not3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.731e-28
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:  268 LPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 597
            +P   D+ + + YIP+ P   P  YPQ   P+  +    E +       DTLF+ FYY+  TYQQY+A +ELKKQSWR+H+KY TWFQRHEEPK+  DEFE G+Y YFDF
Sbjct:  499 VPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVD-----PDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDF 603
The following BLAST results are available for this feature:
BLAST of CX298060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CNOT3_MOUSE1.671e-3656.00CCR4-NOT transcription complex subunit 3 OS=Mus mu... [more]
CNOT3_HUMAN1.671e-3656.00CCR4-NOT transcription complex subunit 3 OS=Homo s... [more]
NOT3_SCHPO3.731e-2850.91General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionC06008B09SK RindPdig24 Citrus clementina cDNA clone C06008B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298060 ID=CX298060; Name=CX298060; organism=Citrus clementina; type=EST; length=637bp
GATCTGAAAGCTCCGTATGCAATTGATTCTTCTACGGGAGTATCTGCCTC
TTTGACAGAGCCTGCTCAAGTTGTCAGGGACACCGATCTTTCTCCTGGAC
AACCCTTACAATCCAGTCAGCCTTCCGGTGGCCTCGGTGTTATTGGCCGG
CGAAGTGTTTCTGATCTTGGTGCCATTGGTGATAGCCTGAGTGGAGCAAC
TGTGAGTTCCGGCGGCATGCATGATCAGATGTACAATATGCAGATGCTTG
AATCTGCATTTTATAAACTTCCACAGCCAAAGGATTCAGAACGCGCCAGG
AGCTACATTCCAAGACACCCTGCTGTAACACCTCCTAGCTATCCTCAAGT
CCAGGCACCCATTGTGAGTAACCCTGCTTTCTGGGAACGATTGTCTCTGG
ACAGCTACGGTACCGATACACTGTTCTTTGCATTTTACTACCAGCAGAAT
ACTTACCAACAATATTTGGCCGCTAAAGAGCTAAAGAAACAATCTTGGAG
ATACCACAGAAAATACAACACATGGTTCCAACGGCATGAGGAGCCTAAAG
TTGCCAATGATGAATTCGAACAGGGAACTTATGTGTACTTTGACTTTCAT
ATCGCCAATGATGATCTCCAACATGGATGGTGTCAAA
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