CX298063

Overview
NameCX298063
Unique NameCX298063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.468e-53
Identity = 106/149 (71.14%), Postives = 115/149 (77.18%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXWYQTMISDSDYTEFENFSKWLGVSQ 449
            WTKSAFEKLD IYG FDK SEKK GYVLPR+KMVNADLARIINSDEVQSVV PI+   KRAP+KKNPL+ LNTML+LNPYAKTARRMSLLAEA+RV            PI+             WYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  260 WTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.591e-52
Identity = 103/149 (69.13%), Postives = 114/149 (76.51%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXWYQTMISDSDYTEFENFSKWLGVSQ 449
            WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDE+QSVV PIK + KRA +KKNPLKNLN ML+LNPYAKTA+RMSLLAEAQRV             +T             WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  258 WTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.000e-51
Identity = 103/149 (69.13%), Postives = 111/149 (74.50%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXWYQTMISDSDYTEFENFSKWLGVSQ 449
            WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDEVQSVV PIK   KRA +KKNPLKNLN M +LNPYAKTA+RMSLLAEA RV             +T             WYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  259 WTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRV 290
            WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR  +KKNPLKNL  M+RLNPYAKTARR ++L + + +
Sbjct:  251 WTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRV 290
            WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR  +KKNPLKNL  M+RLNPYAKTARR ++L + + +
Sbjct:  256 WTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 284
            WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  252 WTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 284
            WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  252 WTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 284
            WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  252 WTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 284
            WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  252 WTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 284
            WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  252 WTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
The following BLAST results are available for this feature:
BLAST of CX298063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL4_PRUAR5.468e-5371.1460S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH1.591e-5269.1360S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH3.000e-5169.1360S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4B_XENLA1.314e-2252.0860S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4A_XENLA1.314e-2252.0860S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_PONAB3.822e-2252.1360S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN3.822e-2252.1360S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT6.519e-2252.1360S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE6.519e-2252.1360S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4_BOVIN6.519e-2252.1360S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06008B12SK RindPdig24 Citrus clementina cDNA clone C06008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298063 ID=CX298063; Name=CX298063; organism=Citrus clementina; type=EST; length=723bp
TTTGGACTAAATCGGCTTTTGAGAAGCTTGATGAAATTTATGGTAAGTTT
GATAAGGGTTCCGAGAAGAAGAAGGGTTATGTGCTGCCTCGTGCTAAGAT
GGTCAACGCTGATTTGGCTAGGATTATTAACTCGGATGAGGTGCAGTCTG
TTGTAAGGCCGATTAAGACTGAGGTTAAGAGGGCTCCAATGAAGAAAAAT
CCTCTCAAGAACTTGAATACGATGTTGCGGTTGAACCCATATGCTAAGAC
TGCTCGGAGGATGTCTCTTTTGGCTGAGGCACAACGGGTTAAAGCTAAGA
AGGAGAAGCTCGACAAGAAAAGGAAGCCCATCACTAAGGAGGAGGCTGCT
GCGATCAAGGCTGCAGGCAAGGCATGGTACCAGACGATGATCTCAGACAG
TGATTATACTGAGTTTGAGAACTTCTCAAAATGGTTGGGTGTCTCACAGT
AATCTGATTGTTGGTTTTTTAATTTTGTTTTCAAGACAATATTTTGTTTA
TCTTTACTGATTTTGTTGTTGAATTGTAGTCTCTTTGGCTCTTTTGAGTC
ATGATGAGAATGTGTGGAAGGAAGATGAGTGGATTTGGGAAATGTGTAGA
CTTTTGTTTCTCCTTCCTCCATTTTTTGTCTCTATCGGCTAGGTGGAAGT
ATTTTCTTCAATGTTAGAATTTGGAGTATATGTTTTAGGAGACGGATTCA
TTGTCTTAATGGTACTATCTTAT
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