CX298064

Overview
NameCX298064
Unique NameCX298064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298064_ssr166 microsatellite CX298064_ssr166:166..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:1425..1951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_CATRO (Adenosylhomocysteinase OS=Catharanthus roseus GN=SAHH PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.864e-13
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+LTK+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLTKDQADYISVPIEGPYKPAHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_LUPLU (Adenosylhomocysteinase OS=Lupinus luteus GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH2_ARATH (Adenosylhomocysteinase 2 OS=Arabidopsis thaliana GN=SAHH2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+LTK+Q+DY+S+  +GPYKP+HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGARLTKLTKDQSDYVSIPVEGPYKPVHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_TOBAC (Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_PETCR (Adenosylhomocysteinase OS=Petroselinum crispum GN=SAHH PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_NICSY (Adenosylhomocysteinase OS=Nicotiana sylvestris GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_MESCR (Adenosylhomocysteinase OS=Mesembryanthemum crystallinum GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_MEDSA (Adenosylhomocysteinase OS=Medicago sativa GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGQLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_SOLLC (Adenosylhomocysteinase OS=Solanum lycopersicum GN=SAHH PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+LTK+QADYI V  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKFGAKLTKLTKDQADYIYVPVEGPYKPAHYRY 485
[Close]
BLAST of CX298064 vs. ExPASy Swiss-Prot
Match: SAHH_PHASS (Adenosylhomocysteinase OS=Phalaenopsis sp. GN=SAHH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.505e-12
Identity = 34/53 (64.15%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 159
            EKKVYVLPKHLDEKV            T+LT  QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLTPSQADYISVPVEGPYKPAHYRY 485
The following BLAST results are available for this feature:
BLAST of CX298064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SAHH_CATRO3.864e-1366.04Adenosylhomocysteinase OS=Catharanthus roseus GN=S... [more]
SAHH_LUPLU6.591e-1364.15Adenosylhomocysteinase OS=Lupinus luteus GN=SAHH P... [more]
SAHH2_ARATH6.591e-1360.38Adenosylhomocysteinase 2 OS=Arabidopsis thaliana G... [more]
SAHH_TOBAC8.608e-1364.15Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAH... [more]
SAHH_PETCR8.608e-1364.15Adenosylhomocysteinase OS=Petroselinum crispum GN=... [more]
SAHH_NICSY8.608e-1364.15Adenosylhomocysteinase OS=Nicotiana sylvestris GN=... [more]
SAHH_MESCR8.608e-1364.15Adenosylhomocysteinase OS=Mesembryanthemum crystal... [more]
SAHH_MEDSA8.608e-1364.15Adenosylhomocysteinase OS=Medicago sativa GN=SAHH ... [more]
SAHH_SOLLC1.468e-1264.15Adenosylhomocysteinase OS=Solanum lycopersicum GN=... [more]
SAHH_PHASS2.505e-1264.15Adenosylhomocysteinase OS=Phalaenopsis sp. GN=SAHH... [more]

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Properties
Property NameValue
Genbank descriptionC06008C01SK RindPdig24 Citrus clementina cDNA clone C06008C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298064 ID=CX298064; Name=CX298064; organism=Citrus clementina; type=EST; length=527bp
GAGAAGAAGGTGTATGTTCTGCCCAAGCACCTCGATGAGAAGGTTGCTGC
TCTTCACCTTGGCAAACTTGGAGCTAAGCTCACCAGGCTCACCAAGGAGC
AGGCTGACTACATCAGTGTGTCCGCCGATGGTCCTTACAAGCCTCTTCAC
TACAGGTACTAAGTGGAAGAAGAAGAAGAAGAAGAGTGAATGTTTTGAGG
GAAAGAAACAAAATATTTGGCCGGCTTGATTGTTTTCAATGATGATCTGT
AGTAGGATGTTAGGTTTAAATTTGGTAGTAGTGTGTGTTTGGGTGGTGGG
AAAGTTGGAGGAAAGAAACGGATTTGTTTCAGTTGATTGAAGACCATTTG
GGATTTGAATAAGGTTTTGGATGGGGCCGTGTTGGATTATGTTGTATTTG
ATGCAGTTTTAAGTTTTGCTTGCTTTGCTGCATCTTGTTATCCTTATTGT
TTACTGATGAATGATTATTAAAAAAAAAAAAAAAATCTTTTTCTCAGTTT
CTTATCTAAATAAAAAATCATTATGAA
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