CX298065

Overview
NameCX298065
Unique NameCX298065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig742 contig Ccv1_Contig742:260..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.078e-30
Identity = 64/78 (82.05%), Postives = 68/78 (87.18%), Query Frame = 2
Query:    2 MEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 235
            MEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P  KKS+K  P  HKRYNLKKLTY+ERKARLVERL ALN
Sbjct:  211 MEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 288          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 MEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 235
            MEDEPEKYQSHF  YIK  +  DN+EE+YKKVHAAIR DP+ KKS+K+PP  HKRYNLKKLTYEERKA+L+ERL ALN
Sbjct:   30 MEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALN 107          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 5.889e-29
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 235
            EDEPEK Q+HF  YIK+G+EA+++EE+YKKVHAAIRA+PN KK+EK  P EHKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  212 EDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.923e-28
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 235
            E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  213 EEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.923e-28
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 235
            EDEPEK Q+HF  YIK+G+EA+++EELYKKVHAAIRADPN KK+ K  P +HKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  212 EDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.817e-28
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 235
            E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  213 EEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.817e-28
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 235
            E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  213 EEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.988e-14
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 229
            E+EPE +Q  F +YIK GI AD +EE+YKK H AIRADP++ +  K      KR+N  KLT  ERK R V+++KA
Sbjct:  213 ENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSE-KKPPAEHKRYNLKKLTYEERKARLVER 220
            +D+ + ++  F +YIK G+ AD +E +YKK H AIRADP+ KK E KK   + KR+N +KLT  ERK R+ ++
Sbjct:  213 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.936e-12
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEERKARL 211
            E++ E ++  F  YIK GI AD+LE++YKK H AIR DP  K + KK  A   KR+N KKLT E+RK ++
Sbjct:  213 EEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
The following BLAST results are available for this feature:
BLAST of CX298065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL5_CUCSA4.078e-3082.0560S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL5_SOLME2.024e-2975.6460S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL52_ARATH5.889e-2974.0360S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL52_ORYSJ2.923e-2875.3260S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ARATH2.923e-2874.0360S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSJ3.817e-2875.3260S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI3.817e-2875.3260S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL5_LYSTE6.988e-1452.0060S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_BOMMO1.009e-1246.5860S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_DROME2.936e-1250.0060S ribosomal protein L5 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionC06008C02SK RindPdig24 Citrus clementina cDNA clone C06008C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298065 ID=CX298065; Name=CX298065; organism=Citrus clementina; type=EST; length=503bp
GATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACATCA
AGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTACAT
GCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCCTCC
AGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAAGGA
AAGCCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGACGAT
GAAGCCGATGAGTGAATGCGATACTAGGAAGTTTTTGTTTCTTAGTTCAA
TAGGTTATTTTCAGAGATTACTAAAATTAAAGAACCTGGCTTGTTTGATA
GGTTGAGAACAGTGTTGTTTCTATGAGCTTTCAAATGCTGATGAGACCTG
GTTGTTTGCTGAAATTCCAGTATTTCAATCTTTTGTAGTCAATGTGCTGA
AATTAGACAATGCAACAAATATTTTTACTCTGAAAAAAAAAAAAAAAAAA
AAA
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