CX298067

Overview
NameCX298067
Unique NameCX298067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 192
            D FY LRLLE+TGI  VPGSGFGQ  G +H+R TILP E+ +PA++  FK F++ FM +Y D
Sbjct:  421 DAFYALRLLESTGIVVVPGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 192
            D FY LRLLE+TGI  VPGSGFGQ  G +H R TILP E+ +PA++  F  F++ FM +Y D
Sbjct:  421 DAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALAT2_HUMAN (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.251e-14
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 186
            D+FYC++LLE TGI  VPGSGFGQ+EG +H R TILP  E +  +++  K F+  F+E+Y
Sbjct:  463 DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKY 522          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALAT2_MOUSE (Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 186
            D+FYC++LLE TGI  VPGSGFGQ+EG +H R TILP  + +  ++   K F+ +F+EQY
Sbjct:  462 DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKDFHLKFLEQY 521          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYE 189
            D +YC++LLEATGI  VPGSGFGQK+G +H RTT LP+EE +  + +    F+  FM +Y+
Sbjct:  474 DAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQSFMNKYK 534          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALAT2_XENLA (Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.545e-14
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 186
            D+F+C++LLE TGI  VPGSGFGQ+EG  H R TILP  + + +++E  K F+ +FM++Y
Sbjct:  480 DMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFMDEY 539          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALAT2_XENTR (Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.235e-13
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 186
            D+F+C++LLE TGI  VPGSGFGQ+EG  H R TILP  + + +++E  K F+ +F E+Y
Sbjct:  464 DMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFTEEY 523          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALAT2_DANRE (Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 186
            D+FYC++LLE TGI  VPGSGFGQ+EG +H R TILP  + +  ++   K F+  F +QY
Sbjct:  489 DMFYCMKLLEETGICLVPGSGFGQREGTYHFRMTILPPTDKLKLMLNKLKDFHQRFTQQY 548          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 186
            D+F+CLRLLE TGI  VPGSGFGQ+EG +H R TILP  E +  ++E   +F+ +F  +Y
Sbjct:  436 DMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPMEKLRPLLEKLSQFHAKFTREY 495          
BLAST of CX298067 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    7 DVFYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 186
            D+F+CLRLLE TGI  VPGSGFGQ+EG +H R TILP  E +  ++E   +F+ +F  +Y
Sbjct:  436 DMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAKFTLEY 495          
The following BLAST results are available for this feature:
BLAST of CX298067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ALA2_PANMI1.724e-1558.06Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALA2_HORVU1.117e-1456.45Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALAT2_HUMAN3.251e-1453.33Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2... [more]
ALAT2_MOUSE4.245e-1453.33Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2... [more]
ALAM_DICDI4.245e-1452.46Probable alanine aminotransferase, mitochondrial O... [more]
ALAT2_XENLA5.545e-1451.67Alanine aminotransferase 2 OS=Xenopus laevis GN=gp... [more]
ALAT2_XENTR1.235e-1351.67Alanine aminotransferase 2 OS=Xenopus tropicalis G... [more]
ALAT2_DANRE1.613e-1351.67Alanine aminotransferase 2-like OS=Danio rerio GN=... [more]
ALAT1_BOVIN1.613e-1353.33Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]
ALAT1_HUMAN3.594e-1353.33Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]

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Properties
Property NameValue
Genbank descriptionC06008C04SK RindPdig24 Citrus clementina cDNA clone C06008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298067 ID=CX298067; Name=CX298067; organism=Citrus clementina; type=EST; length=361bp
GAGGCTGATGTTTTCTACTGTCTCCGGCTTTTGGAAGCCACTGGCATTTC
TACTGTCCCTGGTTCTGGATTTGGACAGAAAGAAGGGGTCTTCCATTTAA
GGACAACAATTTTACCGGCTGAGGAGGACATGCCAGCAATCATGGAGAGT
TTCAAGAAGTTCAATGATGAGTTCATGGAGCAATATGAAGACTACAGGGG
CTATTCAAGAATGTAAGGGACGTCCAAATTCCCAAAATTTGTATTATATT
ATTCAAAGGCTATAGAAAGCCATCGATATATGCTCCCTACTTTCGTCCTA
ACCCCTTTTTAGTAGGAAAAACTTCAGTCGCTTGAAGATTGCCCAAAAAA
AAAAAAAAAAA
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