CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_BOVIN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Bos taurus GN=DLST PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.045e-52
Identity = 108/167 (64.67%), Postives = 126/167 (75.45%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXX--SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+  ALQ QPVVNAV                S AV T +GLVVPVIRN E MN+A+IE+ IS L +KA    ++I++M GGTFTISNGGV+GSL  TPIINPPQSAILGMH+IV+RP+V+GG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VEDPR LLLD+
Sbjct:  289 ASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYADIERTISELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIVDRPVVIGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 455          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_PIG (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Sus scrofa GN=DLST PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.861e-52
Identity = 108/167 (64.67%), Postives = 125/167 (74.85%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXX--SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+  ALQ QPVVNAV                S AV T +GLVVPVIRN E MN+A+IE+ IS L +KA    ++I++M GGTFTISNGGV+GSL  TPIINPPQSAILGMH+IV+RP+ VGG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VEDPR LLLD+
Sbjct:  289 ASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYADIERTISELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIVDRPVAVGGKVEIRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 455          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_HUMAN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.398e-51
Identity = 106/167 (63.47%), Postives = 123/167 (73.65%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXX--SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+  ALQ QPVVNAV                S AV T +GLVVPVIRN E MNFA+IE+ I+ L +KA    ++I++M GGTFTISNGGV+GSL  TPIINPPQSAILGMH I +RP+ +GG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VEDPR LLLD+
Sbjct:  287 ASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 453          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_MOUSE (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlst PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.744e-51
Identity = 106/167 (63.47%), Postives = 124/167 (74.25%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXX--SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+  ALQ QPVVNAV                S AV T +GLVVPVIRN E MN+A+IE+ I+ L +KA    ++I++M GGTFTISNGGV+GSL  TPIINPPQSAILGMH+I +RP+ VGG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VEDPR LLLD+
Sbjct:  288 ASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYADIERTINELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIFDRPVAVGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 454          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_RAT (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlst PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 7.501e-51
Identity = 106/167 (63.47%), Postives = 123/167 (73.65%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXX--SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+  ALQ QPVVNAV                S AV T +GLVVPVIRN E MN+A+IE+ I+ L +KA    ++I++M GGTFTISNGGV+GSL  TPIINPPQSAILGMH I +RP+ VGG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VEDPR LLLD+
Sbjct:  288 ASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYADIERTINELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAVGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 454          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_TAKRU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (Fragment) OS=Takifugu rubripes GN=dlst PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.848e-49
Identity = 103/167 (61.68%), Postives = 119/167 (71.26%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXX--SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            AA  AL  QP VNAV                S AV T KGLVVPVIRN E MNFA+IE+ I+ L +KA +  +++++M GGTFTISNGGV+GSL  TPIINPPQSAILGMH I  RP+ V G    RPMMY+ALTYDHRL+DGREAV FLR+IK  VEDPR LLLD+
Sbjct:  243 AAAHALTDQPAVNAVIDGATNEIVYRDYVDISVAVATPKGLVVPVIRNVETMNFADIERTINALGEKARNNELAVEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFQRPVAVDGKAEIRPMMYVALTYDHRLVDGREAVTFLRKIKAAVEDPRALLLDM 409          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_AZOVI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Azotobacter vinelandii GN=sucB PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 7.021e-49
Identity = 100/165 (60.61%), Postives = 120/165 (72.73%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            AAV AL+ QP VNA                 AV + +GLVVPV+RN+E M+ AEIE  I+   KKA  G ++I+EM GGTFTISNGGV+GSLLSTPI+NPPQ+AILGMH I  RPM V G VV  PMMY+AL+YDHRLIDG+EAV FL  +KD++EDP RLLLD+
Sbjct:  235 AAVEALKRQPGVNASIDGNDIVYHGYQDIGVAVSSDRGLVVPVLRNAEFMSLAEIEGGINEFGKKAKAGKLTIEEMTGGTFTISNGGVFGSLLSTPIVNPPQTAILGMHKIQERPMAVNGQVVILPMMYLALSYDHRLIDGKEAVTFLVTMKDLLEDPARLLLDV 399          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_DICDI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.668e-48
Identity = 94/165 (56.97%), Postives = 124/165 (75.15%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+  AL+ QP+VNA               + AV   +GLVVPVIRN E ++FA+IEKEI  L+  A + +++I++  GGTFTISNGGV+GS+  TPIINPPQSAILGMH+I +RP VV G VV RP+MY+ALTYDHR+IDGREAV FL++IKD++E+P R+LL++
Sbjct:  275 ASTIALKEQPIVNASVEENDIVYHNNVNINVAVSAPRGLVVPVIRNCENLSFADIEKEIGRLSGLARNDALAIEDSIGGTFTISNGGVFGSMFGTPIINPPQSAILGMHAIKDRPYVVNGQVVVRPIMYLALTYDHRIIDGREAVTFLKKIKDVLENPERILLEL 439          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_PSEAE (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Pseudomonas aeruginosa GN=sucB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.551e-48
Identity = 98/165 (59.39%), Postives = 119/165 (72.12%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            AA  AL+  P VNA                 AV + +GLVVPV+RN+E M+ AEIE  I+   KKA +G ++I++M GGTFTISNGGV+GSLLSTPI+NPPQ+AILGMH I  RPM V G VV  PMMY+AL+YDHRLIDG+EAV FL  IKD++EDP RLLLD+
Sbjct:  245 AATEALKRFPGVNASIDGNDIVYHGYQDIGVAVSSDRGLVVPVLRNAEFMSLAEIEGGIANFGKKAKEGKLTIEDMTGGTFTISNGGVFGSLLSTPIVNPPQTAILGMHKIQERPMAVNGQVVILPMMYLALSYDHRLIDGKEAVSFLVAIKDLLEDPARLLLDV 409          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_HAEIN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Haemophilus influenzae GN=sucB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.014e-47
Identity = 93/165 (56.36%), Postives = 122/165 (73.94%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A V AL+  P VNA               S AV T +GLV PV+R+ ++++ AEIEK+I  LA+K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I  RP+ + G VV RPMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLL+I
Sbjct:  245 AVVEALKRYPEVNASIDGDDVVYHNYFDISIAVSTPRGLVTPVLRDCDKLSMAEIEKQIKALAEKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKERPIALNGQVVIRPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLEI 409          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODO2_BOVIN3.045e-5264.67Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_PIG8.861e-5264.67Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_HUMAN4.398e-5163.47Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MOUSE5.744e-5163.47Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RAT7.501e-5163.47Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_TAKRU1.848e-4961.68Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_AZOVI7.021e-4960.61Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_DICDI2.668e-4856.97Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_PSEAE4.551e-4859.39Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_HAEIN1.014e-4756.36Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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