CX298078

Overview
NameCX298078
Unique NameCX298078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length363
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12497 contig Ccv1_Contig12497:706..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 122
            LTDPNPDDPLVPEIAHMYK+D+AKYEATAR+WTQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 122
            LTDPNPDDPLVPEIAHMYK+D+AKYE+TARSWTQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 122
            LTDPNPDDPLVPEIAHMYK+D+AKYE TARSWTQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 122
            LTDPNPDDPLVPEIAHMYK+D++KYE+TARSWTQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 122
            LTDPNPDDPLVPEIAHMYK+DK KYE+TARSWTQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.251e-15
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 122
            LTDPNPDDPLVPEIAHMYK+DK KYE+TAR+WTQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 122
            LTDPNPDDPLVPEIAH+YK+D+ KYE+TA+SWTQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            LTDPNPDDPLVPEIAH+YK+DK KYEA ARSWTQKYA+
Sbjct:  110 LTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 122
            LTDPNP+DPLVPEIAH+YK DK+KYE+TA+ WTQKYAMG
Sbjct:  111 LTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.694e-13
Identity = 30/38 (78.95%), Postives = 37/38 (97.37%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            LTDPNPD+PLVPEIAH+YK+D+A+YEATAR WT+KYA+
Sbjct:  110 LTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of CX298078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
UBC8_ARATH4.536e-1692.31Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC28_ARATH4.536e-1692.31Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC5.924e-1692.31Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH1.010e-1589.74Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC10_ARATH1.010e-1592.31Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH2.251e-1589.74SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC30_ARATH1.117e-1484.62Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH4.245e-1486.84Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC12_ARATH7.241e-1482.05Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC1_COLGL4.694e-1378.95Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionC06008D03SK RindPdig24 Citrus clementina cDNA clone C06008D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298078 ID=CX298078; Name=CX298078; organism=Citrus clementina; type=EST; length=363bp
GAGGGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTGCT
CACATGTACAAGTCCGACAAGGCCAAATATGAAGCCACTGCCAGGAGCTG
GACACAGAAGTATGCCATGGGATAGTTGTTTGGATATTGCAGAAATGGAA
CTCATTTATATGAAATATGTTGTGTTTTTTTCTCCTTTTTCTTCAATCTT
GCTTCGGGAAGGGGATGTTTTGTATTTTAGTAATGAGGAAGGATGTTTGG
GGAGGAGTTGCAAGGGCAAGACGATTTTGTTAATGTTGAATGTTTATTGT
TTGAAACTCCTATCATTCAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
GGGGGGGCCCGGT
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