CX298079

Overview
NameCX298079
Unique NameCX298079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14668 contig Ccv1_Contig14668:309..970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298079 vs. ExPASy Swiss-Prot
Match: PFPB_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.213e-93
Identity = 166/210 (79.05%), Postives = 185/210 (88.10%), Query Frame = 1
Query:   31 GRVASVYSELQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSDYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 660
            GR ASVYSE+Q+SRI+H LPLPSVL +PFKIV GP SSAAGNPDEIAKLFPNLFGQPSA+LVP+ AD++ S+++LKIG+VLSGGQAPGGHNVISGI+DYLQDRAKGS+LYGFRGGPAGIMKC YV+LT+DYI+PYRNQGGFDMICSGRDKIETPEQFKQA ETA               SNTNACLLAE+FRSKNLKT V+GCPKTIDGD
Sbjct:    7 GRAASVYSEVQSSRIEHVLPLPSVLNHPFKIVQGPPSSAAGNPDEIAKLFPNLFGQPSAMLVPDVADSLDSNQQLKIGLVLSGGQAPGGHNVISGIFDYLQDRAKGSILYGFRGGPAGIMKCNYVQLTADYIHPYRNQGGFDMICSGRDKIETPEQFKQAEETAGKLDLNGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGD 216          
BLAST of CX298079 vs. ExPASy Swiss-Prot
Match: PFPB_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 1.941e-83
Identity = 151/209 (72.25%), Postives = 171/209 (81.82%), Query Frame = 1
Query:   34 RVASVYSELQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSDYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 660
            R A+VYSE+Q SR+DH LPLPSVL +PFK+VDGP SSAAG+P+EIAKLFP+L+GQP   LVP+ +  V  ++ LKIGVVLSGGQAPGGHNVISGI+DYLQ   KGS +YGFRGGPAG+MK KYV LT ++IYPYRNQGGFDMICSGRDKIETPEQFKQA ETA               SNTNACLLAE+FRSKNLKT V+GCPKTIDGD
Sbjct:    8 RYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPHVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVVLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGD 216          
BLAST of CX298079 vs. ExPASy Swiss-Prot
Match: PFPA_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25
Identity = 72/212 (33.96%), Postives = 107/212 (50.47%), Query Frame = 1
Query:   52 SELQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNP---DEIAKLFPNLFGQPSALL------VPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSDYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 660
            S+LQ  R  +   LP  L+     V+   ++ A +P     I + FP+ +GQP A        VP+ A  +     +++GV+  G Q+PGGHNVI G++D L+     ++L GF GG  G+   K +E+T D +  Y+NQGG+DM+   +D+I T EQ   A                   SNT+A  LAE F      T V+G P T++GD
Sbjct:   12 SDLQKLRSHYHPELPPCLQGTTVRVELRDATTAADPAGEHTIKRFFPHTYGQPLAHFLRATAKVPD-AQIITEHPAIRVGVLFCGRQSPGGHNVIWGLHDALKVHNPKNILLGFLGGSEGLFAQKTLEITDDVLATYKNQGGYDMLGRTKDQIRTTEQVNAAMAACKALKLDGLVIIGGVTSNTDAAHLAEKFAETKCLTKVVGVPVTLNGD 222          
BLAST of CX298079 vs. ExPASy Swiss-Prot
Match: PFPA_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25
Identity = 71/211 (33.65%), Postives = 107/211 (50.71%), Query Frame = 1
Query:   52 SELQTSRIDHALPLPSVLKNP---FKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLV---PNGADA--VRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSDYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 660
            S+LQ  R  +   LP  L+      ++ DG  + +      I++ FP+ +GQP A  +      ADA  +     +++GVV  G Q+PGGHNV+ G+++ L+     S L GF GG  G+   K +E+T D +  Y+NQGG+D++   +D+I T EQ   A  T                SNT+A  LAE F      T V+G P T++GD
Sbjct:   12 SDLQKLRSLYKPELPPCLQGTTVRVELGDGTTACSEAGAHTISRSFPHTYGQPLAHFLRATAKVADAHIISEHPAMRVGVVFCGRQSPGGHNVVWGLHNALKIHNPNSTLLGFLGGSEGLFAQKTLEVTDDILSTYKNQGGYDLLGRTKDQIRTTEQVHAALTTCKNLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGD 222          
The following BLAST results are available for this feature:
BLAST of CX298079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PFPB_RICCO1.213e-9379.05Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPB_SOLTU1.941e-8372.25Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPA_SOLTU7.017e-2533.96Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPA_RICCO7.017e-2533.65Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
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Properties
Property NameValue
Genbank descriptionC06008D04SK RindPdig24 Citrus clementina cDNA clone C06008D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298079 ID=CX298079; Name=CX298079; organism=Citrus clementina; type=EST; length=662bp
GAGGGTCCCGTCACGTCCGGTACCGTTAAGGGACGCGTGGCTTCAGTTTA
TAGCGAACTCCAAACGAGTCGAATCGATCACGCACTCCCTCTCCCTTCTG
TTCTCAAAAACCCTTTCAAAATCGTCGATGGCCCCGCTAGCTCCGCCGCC
GGCAATCCAGATGAGATTGCGAAATTGTTTCCAAATCTGTTCGGGCAACC
GTCCGCATTGTTGGTGCCGAACGGTGCTGACGCGGTGCGATCTGATGAGA
AGTTGAAAATCGGCGTCGTCTTGTCTGGAGGTCAGGCGCCAGGTGGACAT
AATGTGATCTCTGGAATCTATGATTACTTGCAGGATCGCGCGAAAGGGAG
TGTACTGTATGGATTCAGAGGAGGTCCAGCTGGAATCATGAAGTGCAAAT
ACGTTGAACTAACTTCCGATTATATTTATCCCTATAGAAACCAGGGTGGC
TTTGATATGATCTGTAGTGGGAGAGACAAGATCGAAACCCCAGAGCAGTT
TAAACAAGCTACAGAAACAGCAGTGAAGCTTGATTTGGACGGCCTTGTCG
TTATTGGTGGTGATGATTCAAATACAAATGCTTGCCTCCTTGCTGAACAC
TTCAGGAGTAAAAACTTGAAAACTCTTGTTATGGGATGCCCAAAAACCAT
TGATGGTGACTT
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