CX298083

Overview
NameCX298083
Unique NameCX298083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298083_ssr343 microsatellite CX298083_ssr343:343..357. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298083 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = -2 
Query:  155 EAKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 271
            EAK++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:  159 EAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197
The following BLAST results are available for this feature:
BLAST of CX298083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DS22_CRAPL3.937e-1176.92Desiccation stress protein DSP-22, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC06008D08SK RindPdig24 Citrus clementina cDNA clone C06008D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298083 ID=CX298083; Name=CX298083; organism=Citrus clementina; type=EST; length=623bp
AGGGTCTCGAGTTTTTTTTTTTTTTTTTTTAACTAGAAAATGGTGGTTGA
ATTACAGAATGGCATGAGAAATAGAGATTTAATTACAGTAGGATCTCATA
CATTAATTAGTTAAAAAAAATACAGATCTACAGATCTAAACAAAATTAAG
CTTAAACAAGGGTGCCACCCTTAACAAACTCGGTGAAAGCCAAAGCAACA
AGGCCCAGCATAGCAAACCTCCCATTCCACAACTCAGCATCCGAAGTCAT
GAACCCATCCGATTTAGCCTCGTGCCGAATTCGGCACGAGGGTTACGGAA
GCCGCGGCGGTGGCGGATATGGAGGTGGTGGACGCCGTGAAAGTGGTGGT
GGTGGTGGATACGGTGGGAGCCGCGAATACAGAGGTGGCGGTGGTGGAGG
ATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGATGGTGGATATGGCG
GTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTTCTGATGGCGGCAGC
TGGAGGAATTAGTGTTGTTTAGGATAAATTAGGAGCTATGTTATGGTTTC
GTGTTTTGATATTTTCCTTGGGTTATGTTGTGTCGTTTTGATCGGTTCCT
GTTATCCTGTGATGTTTCGATCT
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