CX298093

Overview
NameCX298093
Unique NameCX298093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.277e-35
Identity = 76/167 (45.51%), Postives = 111/167 (66.47%), Query Frame = 1
Query:   13 GMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETS-----VQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNK--HWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQYNVQHRVKGDKELEN 492
            G+  LQR+G GL F  +AM V+A++E +R  T+       K + +  + L+PQY +VG GEA +Y GQL+FF+RE P+ MK MSTGL LS +++G F SS+LV+IV+K T K   W+  +LNKG+L NFYWL+AVL  LNF++FL  +  + Y  +   +   EL++
Sbjct:  416 GLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRLAEVGIELDD 582          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32
Identity = 65/157 (41.40%), Postives = 106/157 (67.52%), Query Frame = 1
Query:   10 QGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRE------TSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH----WLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQY 450
            +G T LQR+G GL+ S+ AMI + V+E  R +         QK I +S FW +PQY L+G  E F ++GQLEFF  + P+ M+S+ + L L+ +++G ++S++LV++V KIT K+    W+  NLN+G L+ F++LLA L  LNF+V+L+++ +++Y
Sbjct:  406 RGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKY 562          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 67/158 (42.41%), Postives = 101/158 (63.92%), Query Frame = 1
Query:   10 QGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKH-------IQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNK----HWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQY 450
            +G T LQR+G GL+ S+ +M+ + ++E  R    VQ H       I ++ FW VPQYFLVG  E F ++GQLEFF  + P+ M+S+ + L L+AI+ G ++S+ LV++V K+T       W+  NLN G L+ F+WLLA L  LNF+V+L++A  + Y
Sbjct:  406 RGFTQLQRIGIGLVISIFSMVSAGILEVARLNY-VQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTY 562          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.474e-27
Identity = 64/181 (35.36%), Postives = 112/181 (61.88%), Query Frame = 1
Query:   10 QGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKH--------IQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH---WLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQYNVQHRVKGDKE------LENFND 501
            +G+T LQR+G G+I  ++ MI++++ E+ R + + +          I +S F L+PQY L+G  +AF+ + +LEFF  + PE MKS+ T    +++++G F+SS+L+S V +IT K    W+++NLN+ +L+N+Y   AVL LLNF++FL V   ++Y        + E      ++N+N+
Sbjct:  406 RGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRGWIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKEPNMVDNYNE 586          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.380e-25
Identity = 57/157 (36.31%), Postives = 95/157 (60.51%), Query Frame = 1
Query:   10 QGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQ-------KHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH----WLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQ 447
            +G T +QR+G GL  SV+ M  +A++E  R   +           + IS  W +PQYF++GA E F ++GQLEFF  + P+ M+S+ + L L   ++G ++SS+++++V   T ++    W+  NLN G L+ F+WLLA L L+N  V+ F A +++
Sbjct:  423 KGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYK 579          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.015e-25
Identity = 60/161 (37.27%), Postives = 101/161 (62.73%), Query Frame = 1
Query:   10 QGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQK--------HIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH---WLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQYNVQ 459
            +G+T LQR+G GLIF ++ MIV++V E+ R + +            + ++ F L+PQ+ L+G  ++F+ V +LEFF  + PE MKS+ T    +++++G F+SS L+S V +IT K    W+ +NLN+ +L+ +Y   AVL L+NF++FL V   + Y  +
Sbjct:  406 RGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAE 566          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-22
Identity = 57/173 (32.95%), Postives = 99/173 (57.23%), Query Frame = 1
Query:   31 RVGTGLIFSVIAMIVSAVIEQQRRETSVQKH--------IQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH----WLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQYNVQH----RVKGDKELENFND 501
            R+G GL  S +AM +SA++E  RR+ ++ +         + ISA WLVPQY L G  EA   +GQ EFF  E P+ M S++  LF   +++   ++S++++ V+++T+++    W+  N+NKG  N +YW+LA++  +N + ++  +  +   V      RV G +E E   D
Sbjct:  417 RMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICSWSYGPLVDQVRNGRVNGVREEEELID 589          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: S15A4_HUMAN (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.869e-14
Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 1
Query:   19 TSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQ------------ISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRS-----NLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQYNVQHR 465
            +SL+R+  G+ F + +   + ++E +R     +K I             +S +W VPQY L+G  E F  +  LEF     P+ M+S   GLF     +G FV S L+++V  I    W+ S     N+N   LN +++LLA +     ++FL +++K+ ++  H+
Sbjct:  400 SSLKRIAVGMFFVMCSAFAAGILESKRLNLVKEKTINQTIGNVVYHAADLSLWWQVPQYLLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALV-SIKAIGWMSSHTDFGNINGCYLNYYFFLLAAIQGATLLLFLIISVKYDHHRDHQ 564          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: S15A4_XENLA (Solute carrier family 15 member 4 OS=Xenopus laevis GN=slc15a4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.439e-14
Identity = 44/158 (27.85%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   25 LQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQ------------ISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRS-----NLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQ 447
            L+R+  G+ F + +++ + ++E +R E   +  IQ            ++ +W +PQY L+G  E F  +  LEF     P+ M+S+  GLF     +G FV S L+++V  I    W+ +     N+N   LN +++LLA +     ++FL +++K++
Sbjct:  403 LKRIAVGMFFVMCSVLAAGILESERLEIVKRDKIQQQIGNVTYYAANLTVWWQLPQYILIGISEIFASIAGLEFAYSAAPKSMQSVIMGLFFFFSGIGSFVGSGLLALV-SIPQIGWMSNHSDLGNINGCTLNYYFFLLAAVQAATLLLFLIISVKYE 559          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: S15A4_BOVIN (Solute carrier family 15 member 4 OS=Bos taurus GN=SLC15A4 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.013e-13
Identity = 46/159 (28.93%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   19 TSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQ------------ISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRS-----NLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKH 444
            +SL+R+  G+ F + +   + ++E +R +   +K I             +  +W VPQY L+G  E F  +  LEF     P+ M+S   GLF     +G FV S L+++V  +    W+ S     N+N   LN +++LLA +     ++FL V++K+
Sbjct:  393 SSLKRIAVGMFFVMCSAFAAGILESKRLDLVKEKTINQTIGNVVYYAADLPIWWQVPQYVLIGVSEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALV-SLKAIGWMSSHTDFGNINGCYLNYYFFLLAAIQGATLLLFLIVSVKY 550          
The following BLAST results are available for this feature:
BLAST of CX298093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CHL1_ARATH3.277e-3545.51Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR1_ARATH4.429e-3241.40Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH6.395e-3142.41Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH1.474e-2735.36Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR2_ARATH1.380e-2536.31Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3A_ARATH4.015e-2537.27Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR2X_ARATH1.093e-2232.95Probable peptide transporter At1g52190 OS=Arabidop... [more]
S15A4_HUMAN1.869e-1428.92Solute carrier family 15 member 4 OS=Homo sapiens ... [more]
S15A4_XENLA5.439e-1427.85Solute carrier family 15 member 4 OS=Xenopus laevi... [more]
S15A4_BOVIN6.013e-1328.93Solute carrier family 15 member 4 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC06008E06SK RindPdig24 Citrus clementina cDNA clone C06008E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298093 ID=CX298093; Name=CX298093; organism=Citrus clementina; type=EST; length=650bp
CACTCCATCCAAGGAATGACAAGCCTTCAGAGGGTTGGCACTGGACTAAT
TTTTTCAGTGATTGCTATGATTGTTTCTGCCGTTATTGAGCAGCAAAGGA
GGGAAACTTCAGTTCAAAAGCACATCCAAATAAGTGCTTTCTGGCTAGTC
CCTCAGTACTTTCTTGTCGGCGCAGGCGAAGCTTTTGTTTATGTGGGACA
ACTTGAGTTCTTCATTAGGGAAGGGCCAGAGAGGATGAAATCAATGAGCA
CAGGGCTGTTTCTAAGTGCCATTTCAATGGGGATGTTTGTTAGCAGCATG
TTGGTGTCTATTGTTGACAAAATAACCAATAAGCACTGGCTGAGAAGCAA
TTTGAATAAAGGGAAGTTAAACAACTTCTATTGGCTACTTGCAGTGCTAG
GACTTTTGAATTTCATGGTGTTTCTTTTCGTTGCAATGAAGCATCAGTAT
AATGTGCAGCATCGTGTTAAGGGAGATAAAGAGCTTGAGAATTTCAATGA
TGGGAAAGTTTAAGATTTGGAGAACAATTGGATTGCTGAGGGAAAAATGG
AGCTCTAGTTGGTGTTTGCTTTTGAGCTTAATATGTAACAGTATATTGCC
AGGTTGTATTTAGTTAATTTTAAGCATTCTTTTGTGTGCCCTATTAAGCA
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